Rfer009318.1
Basic Information
- Insect
- Rhynchophorus ferrugineus
- Gene Symbol
- bab2
- Assembly
- GCA_014462685.1
- Location
- JAACXV010000309.1:329627-334128[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.5e-15 1.7e-11 43.9 0.1 3 45 360 402 358 402 0.92 2 2 0.17 6.4e+02 0.5 0.4 6 18 468 481 464 483 0.81
Sequence Information
- Coding Sequence
- ATGGCGCAAGCACAGCAGTACTGCCTGCGCTGGAACAATCACAGATCGAATCTGCTGGCCGTCTTCGACGAGCTGCTCCAGAGCGAGTCCTTCACCGATGTCACGCTAGCCTGCGACGGCGGCAGCCCCATCAAATGTCACAGGATGGTGTTGGCAGCCTGTTCGCCGTATTTCCAGAACCTCTTCACCGAGCTGCCCTGCAAACATCCAGTGGTGGTGCTGAAAGATGTGAAATATTGCGAAATCAAGGCCATCCTAGAGTACATGTATAGGGGCGAGGTGAACGTGGCTCAGGACCAGTTGGCGGCTCTTTTGAAAGTAGCGGAAGCCCTTAAAGTCAAGGGACTAGTCGAGGAGAATAGGTCGTGCAAGAGCCCCAAAGAGGAACCCACACCCGTCAACAACTCGCCCTCGATATCGACGTCGAACTCCATCATACAGAACCCCGTCCACAGCAGCAGCAGCAACAACAATTCCCCGCCGCACTCCACCAACTCCATGTACAAGGCCCCGTACGGCTCTTACGAGCGGAAGAGCCATGAGCACAGCTCCAGGATGAACCTGCCGATATGGGCGGTACCCGGTCTTCCCCTGCCTCCACACACCGCGTCGGTTCCCACGCAAAACCACCCTCACGCGGCAGCCACGGCAGCAGCGGCCATGTTGAGCAGCGCCTACGAGGCGGTCAGTTCGGATATGTCGCCGTTGAAGCGAAAGAAACTCAGCAGTCTGCTGATGCAGAGAGACACGCCCATCCTGAGGACAGTGCTGGGACAGGGCCAGGCCGATTCGTCTCAGCCGGTGAGCTTGGTGTGTCATCCGGATAGCGCCGAACACATGGCCAACGAGGAAAGATTCCCCAAGCACCTTAAAAACGAACCCCTGGAGGACGCCCAGTCCCCCTACACCGACTTCACCGAGCGCATGAACGACGAGGAGGAGAAATCTAAACTCGCCGTGCCCTCCTCTTCGCCCCAGTCCTTCACGCACGACGGCAGGACCGTCGTCACCTCCGGCATAGCCACCTACGTGCCCTCGCAGAAACCGGAATGGAAACGGTACAAGCAGTACACCCGCAACGACATCATGTCCGCCATCGAGGCCGTCCGGACGGGGATGTCCGCCCTGCAGGCCGCGCGCAAGTACGGGGTGCCGTCTAGGACCCTCTACGATAAGGTCAAGAAGCTGGGCATTACGACCAGCAGGCCCTTCAAGCGCGGCTCCAACGGCAGCTCCGCCTGCTTCCCCTACTCCACCGGGTCGCCGTACGGCGGCCACCTCTCGGAGAACGACGAGAACATCAACAACAACTCCGCGCTGCTCGAGGCGAGCACCTTCCTGCAGCACGCGCTCGACAGCCGCGGCGGCGCCGAGCGCGAGGCCCTGGCCGCCATGGCAGCGGCCGCCGCCGCCCACGCCGTCGCCTCCGGACACTCCACCAGCCCCAACAACATGGGCCAGGCCCGCAGCCCCAGCCCCAGCCCCACCATGCTCAAGTATATGCGCCACAACAGCCTCACGCCTTCCCCCGCCACCGGCAGCGACCACCACCACAGCGACCAGACCAACGGCAGCTCGGAGAGGGAGCGAGACGACGACGAGGACCAGGTGGAGGACCTGTCCATCAACCGGAAGCGGGAGGCGATGGAATCGAGGGTGATCATGCCGCCCATGAATCAGGTGTCCGCCATCATCAAGAACGAGGAGGTCGCGATGGACGACATCAAGGAGGAGATGCGCAGGGAGATGAGGGTCGAGGGCAAGGCGGACTAG
- Protein Sequence
- MAQAQQYCLRWNNHRSNLLAVFDELLQSESFTDVTLACDGGSPIKCHRMVLAACSPYFQNLFTELPCKHPVVVLKDVKYCEIKAILEYMYRGEVNVAQDQLAALLKVAEALKVKGLVEENRSCKSPKEEPTPVNNSPSISTSNSIIQNPVHSSSSNNNSPPHSTNSMYKAPYGSYERKSHEHSSRMNLPIWAVPGLPLPPHTASVPTQNHPHAAATAAAAMLSSAYEAVSSDMSPLKRKKLSSLLMQRDTPILRTVLGQGQADSSQPVSLVCHPDSAEHMANEERFPKHLKNEPLEDAQSPYTDFTERMNDEEEKSKLAVPSSSPQSFTHDGRTVVTSGIATYVPSQKPEWKRYKQYTRNDIMSAIEAVRTGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGSNGSSACFPYSTGSPYGGHLSENDENINNNSALLEASTFLQHALDSRGGAEREALAAMAAAAAAHAVASGHSTSPNNMGQARSPSPSPTMLKYMRHNSLTPSPATGSDHHHSDQTNGSSERERDDDEDQVEDLSINRKREAMESRVIMPPMNQVSAIIKNEEVAMDDIKEEMRREMRVEGKAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01295881;
- 90% Identity
- iTF_01307345;
- 80% Identity
- iTF_01307345;