Rfun053992.1
Basic Information
- Insect
- Rosalia funebris
- Gene Symbol
- bab1
- Assembly
- GCA_037954035.1
- Location
- JAZFAV010000035.1:17731489-17733326[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.3e-14 1.4e-11 45.7 0.1 3 45 356 398 354 398 0.92
Sequence Information
- Coding Sequence
- ATGGGTACGGCACAGCAATACTGCCTAAGGTGGAACAACCACCGCTCAAATTTACTGACAGTGTTCGACGAACTCCTACAAAACGAGGCTTTTACAGACGTTACGCTAGTCTGTGACGGAGGCGGCCCGATTAAATGCCACAGAATGGTCTTAGCCGCTTGTTCCCCGTATTTCCAGAATTTATTCACCGATCTCCCATGCAAACATCCCGTAGTGGTCCTGAAGGACGTAAAATACACGGAAATCAAAGCAATATTAGAGTATATGTATAGGGGAGAGGTCAACGTTGCTCAAGACCAGTTGGCCGCCCTTCTGAAGATCGCCGAAGCTCTGAAAGTTAAAGGTTTAGTGGAGGAGAATCGATCGCATAAGGGGATTAAGGACCAGGAACTAATGGATCACTCTCCATCGATCACCACCTCCAATTCGGTAATGCAGAATACCGTTCACAGTAGCAGCAACGCTTCCCCGCCACATTCGACGAACTCCATGTATAAAAGCCCGTACAATTTATACAACAACAAATCCCAAGAACACAATTCAAGAATGAATTTGCCCATTTGGGCGGTTCCTGGACTACCTCTGCCACCACACTCATCCTCGGTACCGAATCCTACCCACCCTCACGCTGCCGCAACCGCCGCCGCCGCCATGTTAAACAGCTGCTACGAAGCGGCGAGTTCTGACATGTCTCCGCTCAAGAGAAAAAAGCTGTCCAGTCTGTTGATGAGAGATAGAGACACCCCGATTTTGAGGACGGTTCTTGGTCAAGGACAAGCGGATTCATCCCAACCGGTTAGCCTAGTTTGTCACCCAGATAGCGCAGATCACTCTAGTGGAACCGAAGATCGTATGAagCACATGAAAAATGAACCTTCCGAAGACGCTCAATCGCCGTACACGGATTTCACGCCAATGAACGATGAAGAAGACAAATCGAAATTAGCAATTCCGTCATCTTCTCCTCAATCATTTAGTCACGATATGAGAGGCGTAAGTACGGGCATAGCAACGTACGTTCCCACGCAGAAGCCCGAATGGAAACGATACAAGCAGTACACGAGAAATGATATTATGTCAGCGATCGAAGCAGTCCGAAACGGAATGTCGGCCCTGCAAGCCGCCAGAAAATACGGGGTACCTTCCAGAACCCTTTACGATAAAGTGAAAAAGTTGGGCATAACAACGAGCAGGCCATTTAAACGAGGAAGCAATGGAAGTAGCGCTTGCTTTCCGTACAGTACTGGATCGCCGTATGGCGGACATTTGTCAGAAACCGAAGAAGGGCCTATCAACAACAATTCCGCGCTGATAGATGCAAGTAGCTTCCTCCAACATGCCTTGGATAGTAGCGGCGACGAACGTGGTGCTTTAGCTGCGATGGCTGCTGCAGCTGCAGCCCAAGCTGCCGTCTCGGGACATTCGACGAGCCCCAACAACCACGGTCGAGCAAGAAGTCCAAGCCCCAGCCCTACGATGTTAAAATACATGAGGCACGCCAGCATGACTCCCTCTCCCGCTCCAGGAAGCGACCACCACAACAGCCACAGTGAAACAAACGGAAGTTCCGAAAGAGATCACGAGGACGAGGAAGATCAGGTGGAGGATTTGTCGATTGGGCGTAAGGAATCCAGAGAATCTAGAGTTATAATGCCGCCTATGAATCAGGTTTCCACTATCATGAAAAAGGAGGAAATGCTGATAGATGCCATAAAAGAAGAAGCGAGGAGAGAGGTAAACGTCGACGGAGAAGGGGAGttaatgtaa
- Protein Sequence
- MGTAQQYCLRWNNHRSNLLTVFDELLQNEAFTDVTLVCDGGGPIKCHRMVLAACSPYFQNLFTDLPCKHPVVVLKDVKYTEIKAILEYMYRGEVNVAQDQLAALLKIAEALKVKGLVEENRSHKGIKDQELMDHSPSITTSNSVMQNTVHSSSNASPPHSTNSMYKSPYNLYNNKSQEHNSRMNLPIWAVPGLPLPPHSSSVPNPTHPHAAATAAAAMLNSCYEAASSDMSPLKRKKLSSLLMRDRDTPILRTVLGQGQADSSQPVSLVCHPDSADHSSGTEDRMKHMKNEPSEDAQSPYTDFTPMNDEEDKSKLAIPSSSPQSFSHDMRGVSTGIATYVPTQKPEWKRYKQYTRNDIMSAIEAVRNGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGSNGSSACFPYSTGSPYGGHLSETEEGPINNNSALIDASSFLQHALDSSGDERGALAAMAAAAAAQAAVSGHSTSPNNHGRARSPSPSPTMLKYMRHASMTPSPAPGSDHHNSHSETNGSSERDHEDEEDQVEDLSIGRKESRESRVIMPPMNQVSTIMKKEEMLIDAIKEEARREVNVDGEGELM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01295881;
- 90% Identity
- iTF_01310692; iTF_01295881; iTF_01296618; iTF_01368939; iTF_00886572; iTF_01290515; iTF_00885814; iTF_01369910; iTF_01289689;
- 80% Identity
- iTF_01310692;