Lqua048115.1
Basic Information
- Insect
- Leptura quadrifasciata
- Gene Symbol
- bab2
- Assembly
- GCA_963675555.1
- Location
- OY776678.1:44054205-44056027[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.4e-14 1.8e-11 45.7 0.1 3 45 355 397 353 397 0.92 2 2 4.9 2.6e+03 0.4 0.6 6 17 464 476 460 479 0.81
Sequence Information
- Coding Sequence
- ATGGGTACGGCACAGCAGTACTGTTTGAGGTGGAACAATCATCGCTCGAATCTTTTGACGGTTTTCGATGAACTTCTGCAAAACGAAGCATTTACCGATGTGACGCTCGCGTGTGAGGCAGGTGGTCCTATTAAATGCCATAAGATGGTCTTAGCTGCCTGTTCcccgtattttcaaaatttattcacCGATCTGCCGTGCAAACATCCAGTAGTTGTGCTTAAGGATGTCAAATATTCTGAAATTAAAGCAATATTAGAGTACATGTACAGGGGGGAAGTTAACGTTGCCCAAGACCAGTTAGCCGCCTTATTAAAAGTAGCCGAGGCCTTGAAAGTAAAGGGTTTGGTAGAAGAAAATAGATCGAACAGGAGCCCGAAAGATGAAGAACCGATTGATCACTCTCCATCGATCACCACGTCTAATTCAGTTATGCAAAATACAGTTCACAGTAGCAGCAATAACTCTCCCCCGCACTCCACAAACTCGATATATAAAAACCCGTACCACATGTACAACAACAAATCTCAAGAACCGAATTCTAGAATGAATTTACCTATGTGGGCAGTACCTGGATTACCTTTACCGCCACATTCTTCGTCCGTACCAAACCCTAACCACCCCCACGCCGCCGCCACTGCTGCTGCCGCCATGCTAAACAGCTGTTATGAAGCTGCAAGCTCCGATATGTCCCCGCTGAAGAGAAAGAAGCTGTCTAGCCTGTTAATGAACAGGGACACTCCAATTTTGAGGACAGTACTTGGTCAAGGACAAGCAGATTCTTCCCAACCAGTTAGCCTTGTTTGTCACCCAGATAGCGCGGATCATTCAAGTGGAAACGAGGATCGTATGAAGCACATGAAAAACGAACCGTCTGAAGATGCTCAATCTCCATACACCGATTTCACGCCGATGACCGACGAAGAAGACAAATCCAAACTGGCAATACCTTCATCGTCTCCTCAATCGTTCAGCCACGAAATGAGGGGCGTAAGTACAGGGATCGCGACGTATGTTCCGACACAAAAACCGGAATGGAAGCGATATAAACAGTATACGAGAAATGATATCATGTCCGCCATCGAAGCAGTAAGGAATGGAATGTCTGCGTTACAAGCTGCTAGAAAATACGGTGTACCCTCCAGAACTCTCTAcgataaagtaaaaaaattgggCATAACTACTAGCAGACCTTTCAAACGGGGAACAAATGGAAGTTCCGCGTGCTTCCCTTATAGCACTGGCTCACCGTATGGCGGACATTTATCAGAGACTGACGATGGACCAATGAACAACAACTCCGCGTTAATCGAAGCCAGCACCTTCCTGCAACATGCCTTGGACAGTCGTGGAGGTGATGAACGGGAGGCTTTAGCTGCCATGGCGGCTGCTGCCGCCGCACATGCAGTAGCTTCGGGCCATTCGACAAGTCCCAGCAATCACGGCCGTGCGAGGAGCCCAAGCCCCAGCCCAACTATGTTAAAGTATATGAGACACAATAGCATGACCCCATCCCCCGCCCCCGGAAGCGATCATCATAATAGCCACAGCGAGACAAACGGAAGTTCAGAGAGAGATCACGAAGATGATGAGGACCAAGTGGAGGACCTGTCAATTGGACGGAAGGAATCCCGAGAGTCTAGAGTTATCATGCCCCCAATGAATCAAGTCTCCGCCATTATGAAGAAGGAGGAAATGCTGATCGACAGTATAAAAGAAGAAGCGAGGAGAGAGGTAAGCCTTGACGGAGACGTGGAAtga
- Protein Sequence
- MGTAQQYCLRWNNHRSNLLTVFDELLQNEAFTDVTLACEAGGPIKCHKMVLAACSPYFQNLFTDLPCKHPVVVLKDVKYSEIKAILEYMYRGEVNVAQDQLAALLKVAEALKVKGLVEENRSNRSPKDEEPIDHSPSITTSNSVMQNTVHSSSNNSPPHSTNSIYKNPYHMYNNKSQEPNSRMNLPMWAVPGLPLPPHSSSVPNPNHPHAAATAAAAMLNSCYEAASSDMSPLKRKKLSSLLMNRDTPILRTVLGQGQADSSQPVSLVCHPDSADHSSGNEDRMKHMKNEPSEDAQSPYTDFTPMTDEEDKSKLAIPSSSPQSFSHEMRGVSTGIATYVPTQKPEWKRYKQYTRNDIMSAIEAVRNGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGTNGSSACFPYSTGSPYGGHLSETDDGPMNNNSALIEASTFLQHALDSRGGDEREALAAMAAAAAAHAVASGHSTSPSNHGRARSPSPSPTMLKYMRHNSMTPSPAPGSDHHNSHSETNGSSERDHEDDEDQVEDLSIGRKESRESRVIMPPMNQVSAIMKKEEMLIDSIKEEARREVSLDGDVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01295881;
- 90% Identity
- iTF_01310261;
- 80% Identity
- iTF_00886572;