Cfor003662.1
Basic Information
- Insect
- Cylas formicarius
- Gene Symbol
- bab2
- Assembly
- GCA_029955315.1
- Location
- JARGXY010000002.1:24837424-24845064[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-14 1.2e-11 44.5 0.1 1 45 360 404 360 404 0.97
Sequence Information
- Coding Sequence
- ATGACTACGTCGCAGCAACAGTATTGTCTCCGATGGAACAACCACCGTTCGAATTTGTTGACCGTTTTCGATGAACTGCTTCAAAGCGAATCGTTCACGGACGTTACTCTAGCGTGCGAAGGTGGCAGCCCTATAAAATGTCATAGGATGGTCCTCGCGGCTTGCTCAccgtattttcaaaatatttttaccgatCTGCCCTGTCACCATCCCGTCGTGGTGTTGAAAGATGTCAAGTATAGCGAAATCAAGGCTATTTTGGAGTACATGTACCGAGGAGAAGTAAACGTCGCTCAAGATCAGTTGGCAGCGCTGTTGAAAGTAGCAGAGGCATTAAAAGTCAAGGGATTGGTGGAAGAGaatagGTCCTGCAAAAGTCCGCCCCCCAGGGAAGAACCCGTGTTAGACAACTCCCCGTCGATCTCCACTTCAACACCAACCATCCAGAATCCCGTCCACAGCAGCAGCAACTCACCGCCACACTCCACCCCAAATATTCTGTATAAAAACCCTTACCACCTGTACGAAAGGAAACCTCCTGAGCATAACCCCAGAATGCCGAACCTGCCGATGTGGGCGGTACCCGGATTACCTCTTCCTCCCCACACGGCGTCGGTACCCAGTCAAAGCCACCCCCACGCGGCGGCTACGGCTGCCGCCGCAATGCTAAGCAGCGCTTACGAGGGTGTCAGCTCTGATATGTCGCCTCTGAAGAGGAAAAAGCTGAGCAGTTTGTTGATGCAGAGGGACACGCCTATTTTGCGGACCGTATTAGGTCAAGGTCAAGCAGATTCTTCGCAGCCCGTTAGTTTGGTGTGTCAAAGCGACAGCGGGGATCAACATTCGGGAGGCGAAGACATGATGACCAAGtatttaaaaaacgaacCATCGGAAGACGCTCAATCGCCTTATACCGACTTCACGGAACGCATGAACGACGAAGAGGATAAATCGAAACTAGCGATACCATCCTCGTCGCCTCAATCATTTTCCCACGATATGAGAACCTGCGTTGCGTCAGGCATAGCGACGTACGTCCCAGCCCAAAGGCAAGAGTACAAGAGGTACAAACAATACACGCGGGACGAGATAATGGCTGCCATAGACGCGGTACGTAATGGCATGTCAGCATTGCAAGCAGCTAGAAAATACAAGGTGCCCTCGAGGACACTTTATGACAAAGTGAAAAAATTGGGCATCACCACAAGCAGACCGTTCAAACGGGGAAGCAACGGTAGTTCCAACTGTTTTCCGTACGGCCATGGATCCCCTTACGGCGGACATATGTCGGAAGGGGAAGAGAACATAAATAACAACAGTGCCCTTCTCGAAGCCAGTACGTTTTTACAACACGCATTAGATAGCGGGGGAGGTGACGGACGCGAAGCCTTGGCGGCGATGGCTGCCGTAGCGGCTGCCCACGCCGCCAGTTCGGGACATTCGACGAGTCCCAACAACCACGGCCAAGCTCGCAGTCCGAGTCCAAGCCCGACTATGTTGAAGTACATGAGACATAGTAGCCTGACTCCATCGCCAGCACCCGGCAGTGATCATCACCACAGCGATCAAACAAACGGGAGTTCAGAGCGAGACAGGGATGACGAAGAAGATCACGTGGAAGATTTGTCCATCAACCGGAAACACGAGATGATCGAAACGCGGGTTATAATGCCGCCCATGAATGTATCTGCCATAATCAAAAAGGAAGAGATGCTTATTGACTCTATAAAAGAGGAAGTGCGGATGGAGATGCGCTTGGAAAGTGAAGCCGACTGA
- Protein Sequence
- MTTSQQQYCLRWNNHRSNLLTVFDELLQSESFTDVTLACEGGSPIKCHRMVLAACSPYFQNIFTDLPCHHPVVVLKDVKYSEIKAILEYMYRGEVNVAQDQLAALLKVAEALKVKGLVEENRSCKSPPPREEPVLDNSPSISTSTPTIQNPVHSSSNSPPHSTPNILYKNPYHLYERKPPEHNPRMPNLPMWAVPGLPLPPHTASVPSQSHPHAAATAAAAMLSSAYEGVSSDMSPLKRKKLSSLLMQRDTPILRTVLGQGQADSSQPVSLVCQSDSGDQHSGGEDMMTKYLKNEPSEDAQSPYTDFTERMNDEEDKSKLAIPSSSPQSFSHDMRTCVASGIATYVPAQRQEYKRYKQYTRDEIMAAIDAVRNGMSALQAARKYKVPSRTLYDKVKKLGITTSRPFKRGSNGSSNCFPYGHGSPYGGHMSEGEENINNNSALLEASTFLQHALDSGGGDGREALAAMAAVAAAHAASSGHSTSPNNHGQARSPSPSPTMLKYMRHSSLTPSPAPGSDHHHSDQTNGSSERDRDDEEDHVEDLSINRKHEMIETRVIMPPMNVSAIIKKEEMLIDSIKEEVRMEMRLESEAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01295881;
- 90% Identity
- iTF_00413649;
- 80% Identity
- iTF_00413649;