Ppla050275.1
Basic Information
- Insect
- Philopedon plagiatum
- Gene Symbol
- bab1
- Assembly
- GCA_963971165.1
- Location
- OZ020192.1:97925475-97930779[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.6e-11 4.2e-09 38.4 0.1 1 45 358 402 358 402 0.96 2 2 4.4 5.1e+02 2.9 0.2 6 18 468 481 465 486 0.85
Sequence Information
- Coding Sequence
- ATGACTGAGTCGCAGCAGTACTGTCTGCGATGGAATAATCATCAGTCGAATCTTCTGGCCGTCTTTGATGAACTTCTTCAAAATGAAGCATTCACGGACGTCACGATAGCGTGTGATGGAGGATCCATTAAATGCCATAGGATGGTATTAGTCGCTTGCTCGCCATATTTTCAGAATCTATTTACGGAACTACCATGCAAACATCCCGTGGTGGTACTTAAAGATGTAAAGTACTGTGAAATTAAGGCCATTTTGGAGTATATGTACAGGGGGGAAGTAAATGTTGCTCAGGATCAGTTAGCTGGATTACTACAGGTTGCCGAGGCGTTGAAAGTTAAGGGATTGGTGGATGCAAATAGACCGTGCAAAAGCCCCTCCCGACAAGAGCCTCCACCAATAGATCAACCACCTTCAATTCCCCCATCGGACTCTATTATACCACATCCTGTCCATAGCGGCAACAGAATAAACTCACCGCCTCATTCCACGAACACACTGTACAAAAACCCATATAATTCGTACGATAGAAAGTCTCACAGTGAACACAATACTCGAATGAATTTACCTATTTGGGCTATGCCCGGGTTACCGTTACCTCCACACACTGCAGCAGTACCAAGCCAAATCCATCCGCATGCAGCAGCAACTGCCGCAGCGGCCATGTTAAGTAGCGCATATGAAGCTGTCAGCTCGGACATGTCCccattaaaaaggaaaaaattaagTAGCCTGCTAATGCAGAGGGATACCCCAATCCTAAGAACTGTACTGGGACAAGGACAAACTGATTCCGCCCAACCTGTTAGTTTGGTATGTCATTCGAATAGCTCAGAACTCTCTGGCGGTGAAGAAAGAATGGTAAAACATATGAAAAATGAGCCATCTGAAGATGCACAATCACCTTACACAGACTTCACGGAGCGAATGAACGACGAagaagaaaaatcaaaattagcCATTCCCTCTTCCTCTCCTCAATCATTTTCACACGACATTCGAACGAGTGTAACATCAGGAATTGCTACGTATGTTCCATCTCAGAAACCCGAATGGAAGAGATACAAGCAATACACCAGAGACGATATAATGTCGGCCATCGAGGCAGTGAAAAACGGAATGTCCGCACTACAATCTGCTAGAAAATATGGTGTCCCTTCTAGAACTCTTTATGACAAGGTTAAAAAAATGGGAATTACCACGAGTAGACCATTCAAAAGAGGAAACAATGGTAGCTCGGCATGCTTTCCGTATAGTTCAGGGTCCCCATATGGGGGTCATCTGTCGGAAAGcgaagaaaatattaacaaCAACTCGGCGCTTTTACAGGCAAGTACGTTCCTGCAACATGCTTTGGATAGTAGAGGTGGTGACGAAAGAGAAGCGCTAGCTGCGATGGCAGCGGCTGCCGCAGTTCATGCAGTTGCTTCGGGACATTCTACGAGTCCTAATAACTTGGGACAAGCACGCAGTCCTAGCCCCAGTCCTACAATGTTAAAATACATGAGGCACAATAGCCTTACCCCTTCGCCAGCGCCAGGAAGCGACCATCACCACAGCGACCAGACGAATGGAAGCTCTGAAAGAGAACGAGAGGAGGATGAAGACCAGGTTGAAGATCTCTCAGTGAATCGAAAACAATCCATCGAGTCGCGGGTTATCATGCCGCCTATGAGTCAGATGTCCACCGTAATAAAAAATGAAGACATGTCGATTGATAACTTCAAGACAGGCGCAAGGAGGGAAATGCGTGTGGAAGCAGAGACCGACTAG
- Protein Sequence
- MTESQQYCLRWNNHQSNLLAVFDELLQNEAFTDVTIACDGGSIKCHRMVLVACSPYFQNLFTELPCKHPVVVLKDVKYCEIKAILEYMYRGEVNVAQDQLAGLLQVAEALKVKGLVDANRPCKSPSRQEPPPIDQPPSIPPSDSIIPHPVHSGNRINSPPHSTNTLYKNPYNSYDRKSHSEHNTRMNLPIWAMPGLPLPPHTAAVPSQIHPHAAATAAAAMLSSAYEAVSSDMSPLKRKKLSSLLMQRDTPILRTVLGQGQTDSAQPVSLVCHSNSSELSGGEERMVKHMKNEPSEDAQSPYTDFTERMNDEEEKSKLAIPSSSPQSFSHDIRTSVTSGIATYVPSQKPEWKRYKQYTRDDIMSAIEAVKNGMSALQSARKYGVPSRTLYDKVKKMGITTSRPFKRGNNGSSACFPYSSGSPYGGHLSESEENINNNSALLQASTFLQHALDSRGGDEREALAAMAAAAAVHAVASGHSTSPNNLGQARSPSPSPTMLKYMRHNSLTPSPAPGSDHHHSDQTNGSSEREREEDEDQVEDLSVNRKQSIESRVIMPPMSQMSTVIKNEDMSIDNFKTGARREMRVEAETD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01295881;
- 90% Identity
- iTF_01188382;
- 80% Identity
- iTF_01188382;