Caur015206.1
Basic Information
- Insect
- Crepidodera aurea
- Gene Symbol
- bab2
- Assembly
- GCA_949320105.2
- Location
- OX439474.1:94579-103144[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.1e-15 2.8e-12 47.3 0.2 1 45 349 393 349 393 0.96 2 2 1.7 9.2e+02 0.8 0.4 6 18 460 473 456 479 0.83
Sequence Information
- Coding Sequence
- ATGGCCACCGCCCAACAATATTGCCTCCGTTGGAACAACCATCGCTCAAATCTTCTAACAGTATTCGACGAACTTCTCCAAAACGAAGCATTCACAGACGTGACCCTAGTTTGTGAAGGAGGCGGTCCGATAAAATGTCACAGAATGGTCCTCGCAGCATGCTCCCCCTATTTCCAAAATCTCTTCACAGATTTACCCTGTAAGCATCCCGTGGTAGTACTCAAAGACGTCAAATACACGGAAATTAAAGCAATTTTGGAATATATGTACAGAGGGGAAGTAAACGTAGCTCAAGATCAATTAGCGGCGTTGCTTAAAGTAGCCGAAGCTTTAAAAGTTAAAGGTCTCGTAGAAGAAAACAGATCTAACAGGAGTCCCAAAGAGGAACCGATGGATCACTCATCACCCTCTATCTCTACTTCGAGCTCTGTCATGCAGAATATCGTGCATAGCAGCTCTAACAGCTCGCCCCCTCACTCTACCAACTCTATGTACAAAACCCCCTATCACTTGTTCAATAACAAACCTCAAGACTCTCGATTAAATCTCCCCATGTGGGCTGTACCGGGCCTACCTTTGCCTCCTCACAATTCTCAAGTTCCTAACCCCAATCATCCTGCTACGGCAGGGATTTTGGGCGGTTGTTACGACGTTGCCAATTCGGATATGTCCCCGTTGAAGAGGAAAAAATTGTCTAGTTTATTGATGAACAGGGATACTCCTATTTTGAGGACTGTTCTGGGACAGGGACAAGGACAGGCTGATTCTTCGCAACCAGTTAGTTTGGTGTGTCATCCGGATAGTGCAGACCAGAATAACGGAAATGAAGATAGACTGAAGCACATGAAAAACGAACCCTCAGAAGATGCTCAATCGCCCTACACCGACTTCACCCCGATAAACGACGAAGAAGAGAAATCGAAATTAGCAGTTCCTTCATCTTCGCCCCAATCATTCACACACGACATGAGAGGAGTCGTCACCTCAGGTATAGCGACCTACGTCCCCACCCAAAAACCGGAATGGAAAAGATACAAGCAATACACAAGAACCGAAATTATGTCAGCTATTGAAGCTGTCAGAAACGGTATGTCAGCACTACAGGCTGCTAGAAAATATGGAGTACCCAGTAGGACATTGTacgataaagttaaaaagttggGAATAACTACAAGTAGACCGTTCAAGAGAGGTACTAATGGGTCTTCTAGTTGCTTCTCTTACGGAACAGGATCACCGTATGGAGGACATTTGTCAGAAACCGATGAAGGCCCGATGAACAACAATTCATCCCTCTTAGAAGCTAGTACTTTCCTTCAACACGCTTTAGACGGAAGAGGGGGAGATGAACGCGAAGCTTTAGCTGCTATGGCAGCTGCTGCAGCGGCTCATGCAGTAGCATCGGGGCATTCGACAAGTCCTAGCAATCTTGGTAGAGCCAGAAGCCCCAGTCCAAGTCCCACCATGCTTAAATACATGAGACATGCCAGTTTAACTCCTTCCCCTGCTCCTGGAAGCGATCATCACCATTCTCACAGCGAAACGAACGGTAGTAGCGAAAGAGATCATGATGAAGATGACGATCAAGTAGAGGATCTTTCTATTAATAGAAAAGATTTACGGGAAAGCGCTACTAGAGTTATTATGCCTCCGATGAATAATCAAGTTTCGGCCATCATGAAAAAAGAAGAGTTACTAATCGACAGTCTCAAGGAAGAGGCTAGACGGGAAGTAAGTTTAGATTGCGAGGGTGAATGA
- Protein Sequence
- MATAQQYCLRWNNHRSNLLTVFDELLQNEAFTDVTLVCEGGGPIKCHRMVLAACSPYFQNLFTDLPCKHPVVVLKDVKYTEIKAILEYMYRGEVNVAQDQLAALLKVAEALKVKGLVEENRSNRSPKEEPMDHSSPSISTSSSVMQNIVHSSSNSSPPHSTNSMYKTPYHLFNNKPQDSRLNLPMWAVPGLPLPPHNSQVPNPNHPATAGILGGCYDVANSDMSPLKRKKLSSLLMNRDTPILRTVLGQGQGQADSSQPVSLVCHPDSADQNNGNEDRLKHMKNEPSEDAQSPYTDFTPINDEEEKSKLAVPSSSPQSFTHDMRGVVTSGIATYVPTQKPEWKRYKQYTRTEIMSAIEAVRNGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGTNGSSSCFSYGTGSPYGGHLSETDEGPMNNNSSLLEASTFLQHALDGRGGDEREALAAMAAAAAAHAVASGHSTSPSNLGRARSPSPSPTMLKYMRHASLTPSPAPGSDHHHSHSETNGSSERDHDEDDDQVEDLSINRKDLRESATRVIMPPMNNQVSAIMKKEELLIDSLKEEARREVSLDCEGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01295881;
- 90% Identity
- iTF_01047028;
- 80% Identity
- iTF_00387375;