Hmer030059.1
Basic Information
- Insect
- Hermaeophaga mercurialis
- Gene Symbol
- bab1
- Assembly
- GCA_951812935.1
- Location
- OX638366.1:8201849-8203650[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.2e-15 5.4e-12 46.1 0.1 3 45 347 389 345 389 0.92 2 2 1.2 7.7e+02 0.8 0.4 6 18 456 469 452 475 0.83
Sequence Information
- Coding Sequence
- ATGGCCACCGCACAACAATACTGCCTCCGTTGGAACAACCACCGCTCAAATCTTCTAACAGTATTCGAGGAACTTCTTCAAAACGAAGCATTCACAGACGTGACCCTCGCCTGTGAAGGTGGCGGCCCTATAAAATGTCACAGAATGGTACTGGCGGCGTGCTCACCCTATTTCCAAAACCTGTTCACCGATTTACCATGTAAACACCCTGTAGTGGTACTGAAGGACGTTAAATACACAGAAATCAAAGCAATACTGGAGTACATGTACAGGGGAGAGGTGAACGTAGCTCAAGACCAATTGGCAGCGTTGCTCAAGGTAGCTGAAGCTTTAAAAGTCAAAGGATTGGTAGAAGAAAATAGATCTGACAGGAGTCCGAAAGAAGAACCGATCGATCACTCTCCGTCCATCTGTACTTCGAGCTCTGTAATGCAAAATATAGTTCACAGTAGTTCGAACAGCTCACCGCCACACTCCACCAACTCTATATACAAAAGTCCTTACCACATGTTCAACAACAAACCTCAAGACTCCCGGCTGAACCTCCCCATGTGGACGGTGCCAGGAATGCCTTTGCCTCCACACAACCCGCAAGTTTCTAACTCAAACCATCCGACGACCGCGAGATTATTGAGCGGTTGTTACGAAGCTGTCACCTCGGATATGTCGCCGCTGAAGAGGAAGAAGCTATCTAGTTTGCTAATGAATAGAGACACCCCGATTCTGAGGACCGTTTTAGGACAAGGACAAGCGGATTCTTCGCAACCAGTAAGCTTGGTTTGCCATCCTGATAGCGCTGAACAGAGTAACGGCAACGAAGACAGACTGAAGCACATGAAAAACGAACCCTCCGAAGATGCTCAATCTCCTTATACTGACTTCACTCCCATGAATGATGAAGACGACAAATCCAAGCTAGGTATCCCATCATCATCCCCCCAATCTTACAGCCATGACATGAGAGGCGTAAGCTCAGGAATAGCGACTTATGTCCCTACACAGAAACCGGAATGGAAAAGATATAAGCAATACACAAGAAACGACATCATGTCAGCAATCGAAGCTGTGCAAAACGGCATGTCTGCGCTCCAAGCCGCAAGAAAATACGGAGTACCTAGCAGGACTTTGTACGACAAAGTTAAAAAACTCGGAATAACTACAAGCCGGCCGTTCAAGAGAGGTACCAATGGTTCTTCGCCTTGTTTATCTTACGGTACGGGATCTCCTTATGGCGGACATCTATCAGAAAGCGATAAAAGTCCAATGAACAACAACTCGGCTCTCCTTGAAGCTAGTACTTTCCTGCAACACGCTTTGGACGGAAGAGGCGGAGATGAACGAGAAGCTTTAGCTGCGATGGCGGCGGCTGCTGCTGCTCATGCTGTCGCTTCTGGACATTCAACGAGCCCCAGCAATCTCGGTAGAGCTAGAAGCCCGAGTCCAAGTCCCACAATGCTAAAATACATGATGCACAGCAGCCTCACACCATCACCCGCTCCAGGAAGCGACCATCATAATTCTCACAGCGAAACAAACGGCAGCAGCGAACGAGACCATGACGAAGACGAAGATCACGTCGAAGATCTTTCCATTAACAGAAAAGAACAAAGAGAAAGCGTCACAAGAGTCATAATGCCGCCGATGAACCAAGTGTCCGCCATTATAAAGAAAGAGGAGTTGTTGATCGACAGCCTCAAGGAGGAGGCCAGAAGAGAAGTAAGTTTAGAGTGCGAGGGGGAGTAA
- Protein Sequence
- MATAQQYCLRWNNHRSNLLTVFEELLQNEAFTDVTLACEGGGPIKCHRMVLAACSPYFQNLFTDLPCKHPVVVLKDVKYTEIKAILEYMYRGEVNVAQDQLAALLKVAEALKVKGLVEENRSDRSPKEEPIDHSPSICTSSSVMQNIVHSSSNSSPPHSTNSIYKSPYHMFNNKPQDSRLNLPMWTVPGMPLPPHNPQVSNSNHPTTARLLSGCYEAVTSDMSPLKRKKLSSLLMNRDTPILRTVLGQGQADSSQPVSLVCHPDSAEQSNGNEDRLKHMKNEPSEDAQSPYTDFTPMNDEDDKSKLGIPSSSPQSYSHDMRGVSSGIATYVPTQKPEWKRYKQYTRNDIMSAIEAVQNGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGTNGSSPCLSYGTGSPYGGHLSESDKSPMNNNSALLEASTFLQHALDGRGGDEREALAAMAAAAAAHAVASGHSTSPSNLGRARSPSPSPTMLKYMMHSSLTPSPAPGSDHHNSHSETNGSSERDHDEDEDHVEDLSINRKEQRESVTRVIMPPMNQVSAIIKKEELLIDSLKEEARREVSLECEGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01295881;
- 90% Identity
- iTF_01047028;
- 80% Identity
- iTF_00792304;