Avir016313.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- bab2
- Assembly
- None
- Location
- GWHAMMQ00000086:601882-610414[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.3 2.7e+03 -1.8 0.0 25 31 214 220 211 231 0.78 2 3 1.2e-14 3.8e-12 45.7 0.1 3 45 347 389 345 389 0.92 3 3 1.2 4e+02 0.8 0.4 6 18 459 472 455 478 0.83
Sequence Information
- Coding Sequence
- ATGGCCATTACGCAACAGTTCTGCTTACGTTGGAATAACCATCGCTCAAATTTACTAACAGTATTTGATGAACTTCTCCAAAATGAGGCTTTTACAGATGTAACATTGGCGAGTGAAGGAGGTCCTTCAATAAAATGCCACAGAATGGTGTTGGCAGCATGTTCACCTTATTTTCAAAATTTGTTTACGGATTTACCATGTAAGCATCCTGTGGTAGTTCTAAAGGATGTCAAGTATTCTGAAATTAAAGCAATATTGGAGTATATGTATAAGGGGGAAGTAAATGTAGCTCAAGATCAACTAGCAGCATTATTAAAAGTAGCAGAAGCATTAAAAGTTAAAGGTTTGGTGGAAGAGAATAGAGCAACTAGGAGTCCCAAGCCCGAACCAATAGACCATTCCTCCTCATCTATATCAACATCAAGTTCAGTTATGCAAAACATAGTACATAGTAGTAGTAACTCATCTCCTCCCCATTCAACCAACAATATGTATAAAAACCCCTATCATATTTTCAACAATAAACCTCAAGACTCACGTTTAAACCTTCCTATGTGGGCTATACCTGGACTACCCCTTCCTCCCCATAATTCTCAAGTTCCTACCTCGAATCACCCTCCACCAGGAATGCTCAGTGGATGTTACGATATTCCCACCTCCGATATGTCACCGTTAAAACGAAAGAAACTATCAAGTCTACTAATGAACAGAGATACCCCAATATTACGAACTGTATTGGGACAAGGACAAGCTGATTCATCTCAACCAGTTAGTTTAGTTTGTCATCCTGACAGTGCCCAACAATCGAATGGAAACGAAGATAGACTTAAGCATATGAAAAATGAACCTTCCGAAGATGCTCAGTCTCCGTATACGGACTTTACCCCAATGAACGACGAAGAAGATAAATCGAAGTTAGCTGTACCCTCCTCTTCTCCTCAGTCGTTCAGCCATGACATAAGAGGAGTGACTTCAGGAATAGCAACCTATGTTCCTTCGCAAAATAAAGAGTGGAAGCGATACAAACAATATACCCGAAACGATATAATGTCTGCAATAGAAGCTGTTAGAAATGGTATGTCTGCACTTCAGGCTGCAAGAAAGTATGGTGTGCCTTCACGAACTTTATACGACAAAGTAAAAAAATTGGGTATTACAACAAGTCGGCCCTTTAAACGCGGTACTAATGGTAGTTCAGCTTGTTTCTCCTATGGAACAGGCTCGCCATATGGTGGCCATCTATCGGAAAATGATGACAGTCCTATGAACAGTATGAATAATAATTCAGCCTTATTGGAAGCGAGTACCTTCCTGCAACATGCCTTAGATGGTCGAGGAGGTGATGAACGAGAAGCGCTAGCAGCAATGGCTGCAGCTGCTGCTGCTCATGCTGTAGCCTCAGGCCATTCCACAAGTCCAAGTAATCTTGGCAGAGCTAGAAGTCCCAGTCCAAGTCCGACGATGTTGAAGTTTATGCGACACGCTAGTTTAACTCCATCTCCAGCTCCAGGAAGTGATCATCATAATTCACATAGCGAAACAAACGGAAGTTCAGAACGAGATCATGAAGACGAAGAGGACCAAGTTGAAGATTTATCGATGCACAGAAAAGAACATAGAGAAACTACCAGGGTGATCATGCCTCCAATGAATCAAGTTTCAGCTATAATTAAAAAAGAAGAACTACTAATAGACAGTCTGAAAGAAGAGGCGCGTCGAGAAGTAAGTTTAGATTGTGAAGGAGAATAA
- Protein Sequence
- MAITQQFCLRWNNHRSNLLTVFDELLQNEAFTDVTLASEGGPSIKCHRMVLAACSPYFQNLFTDLPCKHPVVVLKDVKYSEIKAILEYMYKGEVNVAQDQLAALLKVAEALKVKGLVEENRATRSPKPEPIDHSSSSISTSSSVMQNIVHSSSNSSPPHSTNNMYKNPYHIFNNKPQDSRLNLPMWAIPGLPLPPHNSQVPTSNHPPPGMLSGCYDIPTSDMSPLKRKKLSSLLMNRDTPILRTVLGQGQADSSQPVSLVCHPDSAQQSNGNEDRLKHMKNEPSEDAQSPYTDFTPMNDEEDKSKLAVPSSSPQSFSHDIRGVTSGIATYVPSQNKEWKRYKQYTRNDIMSAIEAVRNGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGTNGSSACFSYGTGSPYGGHLSENDDSPMNSMNNNSALLEASTFLQHALDGRGGDEREALAAMAAAAAAHAVASGHSTSPSNLGRARSPSPSPTMLKFMRHASLTPSPAPGSDHHNSHSETNGSSERDHEDEEDQVEDLSMHRKEHRETTRVIMPPMNQVSAIIKKEELLIDSLKEEARREVSLDCEGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01295881;
- 90% Identity
- iTF_00056723;
- 80% Identity
- iTF_00056723;