Casp028462.1
Basic Information
- Insect
- Crioceris asparagi
- Gene Symbol
- bab2
- Assembly
- GCA_958507055.1
- Location
- OY293829.1:11518884-11521235[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.1e-14 1.1e-11 45.8 0.1 1 45 373 417 373 417 0.97
Sequence Information
- Coding Sequence
- ATGGCCAACGCTCAACAGTACTGTCTCAGATGGAACAATCATCGATCGAATTTGCTCACTGTTTTCGATGAACTTTTACAAAATGAAGCCTTCACCGATGTCACGTTAGCCTGCGAAGGTGGCAGTCCaatcaaatgccacagaatggTATTGGCCGCCTGCTCGCCctatttccaaaatatattcacCGATCTGCCTTGCAAACATCCAGTCGTGGTGCTCAAAGATGTCAAGTACTCTGAAATCAAGGCCATCCTGGAATACATGTACCGAGGAGAGGTAAATGTGGCTCAGGATCAGCTTGCTGCTCTGCTAAAAGTAGCTGAAGCTTTGAAAGTGAAAGGACTGGTTGAGGAGAATCGCAATAACCGAACAAAAGATGATAGTAGAATGGATCATTCACCATCAATAACCACATCCAACAACTCGATAATGCAAAACACAGTGCATAGCAGTAGTAGTAACACTTCTCCACCCCATTCCACCAAAACCATCTACAAGAACCCCTACTACAGCATGTACACGGGCAAGAACAACCAAACAGAGCCCTCTAGGGAGCAACGGGAGCAACAGCAACGCATCAATATGCCTCTGTGGGCAGTACCTGGGCTACCGATGCCGCCTCACACTTCTTCACTGCCccacaataacaacaacaataaccACCCACATGCGGCCAGCACAGCGGCGGCCGCCATGTTGGGTGGATGCTACGAGGCCGTCAGCTCAGACATGTCGCCACTGAAACGCAAGAAACTCAGCAGCTTGCTCATGCAAAGAGATACTCCGATATTGAGGACGGTGTTGGGTCAAGGTCAAGCAGACTCATCGCAACCAGTCAGTCTGGTATGTCATCCCGATAGCGCTGAGAACAACTCCAACAATATTAACGATGACCGGCTCAAGCACATGAAGAACGAGCCTTCAGAAGACGCTCAATCGCCCTACACTGATTTCACATCCAACAACATAAACGTTGAAGACGACAACAAATCCAAACTTGCCATACCCTCATCTTCGCCACAATCATTCAGTAGTCAGGATATGCACGATATCACTTCTGGCATTGCCAACTATGTGCCTGCCAACAGGGAATGGAAGCGATACAAACAATATACCAGGGACGAGATCATGGCCGCCATTGAAGCAGTCAGAAATGGTATGTCAGCACTTCAAGCAGCGAGAAAGTACAAGGTTCCATCGAGAACACTATACGACAAGgtAAAAAAATTGGGTATCACAACCAGCAGACCTTTCAAACGTGGTTCCAATGGCAGTTCGTCTTGCTTTCCCTACGGCACTGGTTCCCCATATGGGGGGCACATGTCCGAGTCTGATGATACATCAATCAACAACAATTCATCTCTAATGGAAGCCAGCACCTTTTTGCAGCACGCCCTTGACCGAGGTGGTGACGAACGTGAGGCTTTGGCCGCCATGGCCGCTGCAGCTGCTGCCCATGCTGTAGCTTCGGGGCGCTCATCCAGCCCGCACAGAGCAAGAAGCCCCAGTCCCAGCCCCACAATGCTCAAATATATGAAGCACTCCAGCATGACGCCCTCACCAGCAGCGGGTAGTGACCATCATAACAGCCACAGTGAAACCAATGGCAGCTCCGAACGTGAGCACGAAGATGACGAGGACCAAGTTGAAGATCTGTCAATTAATAGGAATAAAGAGCCCCGAGAATCCAGGGTAATCATGCCACCAATGAACCAGGTGTCGGCCATTATTAAGAAAGAAGAAATGCTCATTGATTGCCTCAAGGAGGAAGCCAGCAGAAGGGAGGTAAGCATGGGGGAGTGCGAtgctgaataa
- Protein Sequence
- MANAQQYCLRWNNHRSNLLTVFDELLQNEAFTDVTLACEGGSPIKCHRMVLAACSPYFQNIFTDLPCKHPVVVLKDVKYSEIKAILEYMYRGEVNVAQDQLAALLKVAEALKVKGLVEENRNNRTKDDSRMDHSPSITTSNNSIMQNTVHSSSSNTSPPHSTKTIYKNPYYSMYTGKNNQTEPSREQREQQQRINMPLWAVPGLPMPPHTSSLPHNNNNNNHPHAASTAAAAMLGGCYEAVSSDMSPLKRKKLSSLLMQRDTPILRTVLGQGQADSSQPVSLVCHPDSAENNSNNINDDRLKHMKNEPSEDAQSPYTDFTSNNINVEDDNKSKLAIPSSSPQSFSSQDMHDITSGIANYVPANREWKRYKQYTRDEIMAAIEAVRNGMSALQAARKYKVPSRTLYDKVKKLGITTSRPFKRGSNGSSSCFPYGTGSPYGGHMSESDDTSINNNSSLMEASTFLQHALDRGGDEREALAAMAAAAAAHAVASGRSSSPHRARSPSPSPTMLKYMKHSSMTPSPAAGSDHHNSHSETNGSSEREHEDDEDQVEDLSINRNKEPRESRVIMPPMNQVSAIIKKEEMLIDCLKEEASRREVSMGECDAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01295881;
- 90% Identity
- iTF_00388821;
- 80% Identity
- iTF_00388821;