Sory007297.1
Basic Information
- Insect
- Sitophilus oryzae
- Gene Symbol
- bab2
- Assembly
- GCA_002938485.2
- Location
- NW:812179-865031[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3e-13 6.7e-11 41.4 0.1 1 45 358 402 358 402 0.97 2 2 1.9 3.9e+02 0.6 0.3 6 18 468 481 466 483 0.83
Sequence Information
- Coding Sequence
- ATGGCACAAGCTCAACAGTACTGCCTGAGGTGGAACAACCATCGATCAAATTTGCTCACTGTCTTCGATGAACTGCTTCAAAACGAGTCGTTCACCGATGTGACGTTAGCTTGTGATGGAGGCAGTCCTATTAAATGCCACAGGATGGTCCTTGCTGCTTGTTCTCCATATTTTCAAAACCTGTTCATAGATTTGCCATGTAAACATCCTGTAGTAGTATTGAAGGACGTAAAATACAGTGAGATCAAGGCCATCTTAGAATATATGTATAGAGGAGAAGTAAACGTTGCTCAAGACCAACTGGCAGCGCTTTTAAAAGTTGCCGAAGCTCTAAAAGTTAAAGGCTTAGTAGAGGAAAACAGgTCATGTAAGAATCCGAAAGATGAACCACCGACTGCAGTGAATCATTCACCATCGATTTCTACCTCAAATAGCATCATACAAAATCCCGTTCACAGTAGTAGTCATAATTCACCACCCCATTCCACAAATTCAATGTACAGAAATCCTTACAGCTCCTATGACAGAAAACCACAAGAACACAATCATTCGAGAATGAATTTACCTATATGGGCTGTACCTGGTTTACCTCTACCACCTCATACTGCATcgGTTCCAAGCCAAACGCATCCTCACGCAGCTGCAACCGCAGCAGCAGCAATGCTGAACAGCGCCTATGAAGCTGTTAGCTCGGATATGTCGCCGCTGAAAAGGAAGAAGCTGAGCAGTTTACTGATGCAGAGAGATACCCCGATCTTGAGGACGGTACTTGGCCAAGGGCAGGCAGATTCGTCACAACCTGTCAGTTTAGTTTGCCATCCCGATAGCGCCGATCAGTCTTCAAACGACGAGAGAATTATTAAGCATATGAAAAATGAACCATCCGAAGATGCACAGTCTCCTTACACAGAATTCACTGAACGAATCAACGACGAAGAAGAAAAATCAAAACTAGCCATTCCCTCTTCATCACCTCAATCGTTCAGTCACGACGGCAAAAGTACTATCGGCTCAGGTATAGCTACATACGTACCGGTCCAAAGACCTGAATATAAAAGATACAAACTATATACCAGAGACGATATCATGTCGGCCATCGAAGCAGTGAGAACGGGCATGTCAGCTTTACAAGCAGCAAGGAAATACAAGGTACCTTCCAGAACTCTTTACGACAAAGTGAAAAAGTTAGGTATAACAACGAGCAGACCGTTTAAGAGAGGCACCAACGGGAGTTCAGCCTGTTTCCCATATTCTACCGGTTCTCCTTACGGAGGATATCTGTCGGAAAACGATGAGAACATCAACAATAACTCCGCTCTCCTCGAAGCGAGTACCTTCCTTCAACATGCCTTGGATAGCCGAGGGGGAGAGGAACGAGAAGCTCTGGCCACGATGGCCGCAGCTGCCGCAGCTCATGCAGTGGCGTCGGGCCATTCCACCAGTCCTAACAACTTCGGACAGGCCAGGAGTCCTAGTCCGAGTATACTGAAGTATATGAGGCACAGTAGCCTGACTCCTTCACCTGCAGCACCTAGTGAACACCAGCACAGCGATCAAACCAACGGCAGTTCGGAAAGAGACAGGGACGAGGAAGAGGACCAAGTGGAAGATTTATCTATCCATAGAAAACACGAGGCTATGGAATCGCGCGTGATCATGCCGCCGATGAATCAAATGTCTGCCATAATTAAAAAGGAGGACCTTCTTGTCGACACGATTAAGGAAGAGATGCGACGAGAGATGAGAGTTGATAGTGAAGCAGATTAG
- Protein Sequence
- MAQAQQYCLRWNNHRSNLLTVFDELLQNESFTDVTLACDGGSPIKCHRMVLAACSPYFQNLFIDLPCKHPVVVLKDVKYSEIKAILEYMYRGEVNVAQDQLAALLKVAEALKVKGLVEENRSCKNPKDEPPTAVNHSPSISTSNSIIQNPVHSSSHNSPPHSTNSMYRNPYSSYDRKPQEHNHSRMNLPIWAVPGLPLPPHTASVPSQTHPHAAATAAAAMLNSAYEAVSSDMSPLKRKKLSSLLMQRDTPILRTVLGQGQADSSQPVSLVCHPDSADQSSNDERIIKHMKNEPSEDAQSPYTEFTERINDEEEKSKLAIPSSSPQSFSHDGKSTIGSGIATYVPVQRPEYKRYKLYTRDDIMSAIEAVRTGMSALQAARKYKVPSRTLYDKVKKLGITTSRPFKRGTNGSSACFPYSTGSPYGGYLSENDENINNNSALLEASTFLQHALDSRGGEEREALATMAAAAAAHAVASGHSTSPNNFGQARSPSPSILKYMRHSSLTPSPAAPSEHQHSDQTNGSSERDRDEEEDQVEDLSIHRKHEAMESRVIMPPMNQMSAIIKKEDLLVDTIKEEMRREMRVDSEAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01295881;
- 90% Identity
- iTF_01351887;
- 80% Identity
- iTF_01351887;