Aaln032363.1
Basic Information
- Insect
- Agelastica alni
- Gene Symbol
- bab2
- Assembly
- GCA_950111635.2
- Location
- OX467713.1:12498774-12502104[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-15 1.9e-12 48.4 0.1 1 45 345 389 345 389 0.97 2 2 0.81 1.5e+03 0.7 0.4 6 18 456 469 452 472 0.82
Sequence Information
- Coding Sequence
- ATGGCCACCGCTCAACAGTACTGTCTCCGTTGGAACAATCACCGTTCCAACCTCCTGACAGTGTTCGATGAACTTCTTCAAAACGAAGCATTCACCGACGTTACCTTAGCGTGTGAGGGAGGCTCACCCATCAAATGTCACAGAATGGTACTCGCAGCTTGTTCGCCGTACTTTCAAAGCCTCTTCACTGACTTGCCTTGCAAGCATCCCGTCGTAGTATTAAAAGATGTTAAATACATAGAAATCAAAGCTATATTAGAGTATATGTATAAAGGAGAGGTAAACGTGGCGCAGGACCAACTTGCAGCTTTACTAAAAGTCGCCGAGGCGTTAAAAGTTAAAGGTTTAGTAGAAGAAAATAGGTCCAATAAAAGTCCCAAACAAGAAGAACCTACGAATCATTCACCTTCGATAACTACTTCGAGTTCCGTGATGCAAAATATAGTACACAGTAGCAGTAATAGTTCCCCACCACACTCTACTAATAACCTTTACAAGAATCCCTACAATATGTACAACAAACCGCAAGATTCCCGATTAAATCTACCTATGTGGCCGATGCCCGGTCTACCATTACCTCCGCACACCTCTTCACAAGTTCCTACCAGCAATCCTCATAGCACTGCGACAAGATTAAGTGGTTGCTACGACGTCGCTACTTCGGATATGTCAccgttaaaaagaaaaaaactctcCAGCTTACTTATGCATAGAGATACCCCAATTCTGAGGACCGTTTTGGGACAAGGGCAAGGGCAAGCTGATTCCTCGCAACCGGTCAGTTTGGTCTGCCATCCCGACAGCGCGGAACAAAGTAACGGAAACGATGACAGGTTAAAGCACATGAAAAACGAACCATCAGAAGACGCTCAATCCCCATTTACGGACTTCACTCCCATGAACGACGACGAAGAAAAATCGATGCCTTCTTCCTCGCCGCAATCATTTTCTCGCGAAATGCGTGGAGTTGCTTCTGGTATAGCCCCTTACGTCCCCGAACAAAATCAACCGTGGCGAAGGTACAAACAATACACCAGAGATGAAATAATGGCCGCCATAGAAGCAGTTAGAAATGGTACGTCAGCATTGCAAGCAGCTCGAAAATACGGTGTACCTTCTAGAACATTGTAcgacaaagtaaaaaaattaggaatAACGACCAGCAGGCCCTTCAAACGAGGCACCAACGGAAGTTCCAACTGCTTTTCATACGGCACTGGTTCTCCATATGGTGGCCATCTTTCTGAATCTGACGAGCATACAATGAACAACAATTCTGCTCTGATGGAAGCTAGCACTTTTCTTCAGCATGCTTTAGATGGTAGAGGGGGAGATGAAAGGGAAGCTTTAGCCGCAATGGCGGCGGCAGCTGCTGCACATGCAGTTGCGTCGGGTCACTCGACGAGTCCAAATAATCTTGGAACTGCCAGAAGTCCGAGCCCAAGTCCTACGATGTTAAAATACATGCGACACGCAAGCTTAACTCCTTCGCCAGCGCCGGGTAGTGATCACCACAACTCCCATAGCGAAACCAACGGGAGTTCAGAAAGAGATCACGAAGACGAGGAAGACCAAGTGGAAGATTTGTCGATAAACAGGAAGGACCGTCACAGAGAAAGAGAAACGACGAGGGTAATAATGCCCCCCATGAACCAAGTATCTGCGATAATGAAAAAAGAAGAGCTATTGATCGACAGTCTCAAAGCTGAAGCTAGAAGAGAAGTAAGTGTAGATTGCGAGGGAGAATGA
- Protein Sequence
- MATAQQYCLRWNNHRSNLLTVFDELLQNEAFTDVTLACEGGSPIKCHRMVLAACSPYFQSLFTDLPCKHPVVVLKDVKYIEIKAILEYMYKGEVNVAQDQLAALLKVAEALKVKGLVEENRSNKSPKQEEPTNHSPSITTSSSVMQNIVHSSSNSSPPHSTNNLYKNPYNMYNKPQDSRLNLPMWPMPGLPLPPHTSSQVPTSNPHSTATRLSGCYDVATSDMSPLKRKKLSSLLMHRDTPILRTVLGQGQGQADSSQPVSLVCHPDSAEQSNGNDDRLKHMKNEPSEDAQSPFTDFTPMNDDEEKSMPSSSPQSFSREMRGVASGIAPYVPEQNQPWRRYKQYTRDEIMAAIEAVRNGTSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGTNGSSNCFSYGTGSPYGGHLSESDEHTMNNNSALMEASTFLQHALDGRGGDEREALAAMAAAAAAHAVASGHSTSPNNLGTARSPSPSPTMLKYMRHASLTPSPAPGSDHHNSHSETNGSSERDHEDEEDQVEDLSINRKDRHRERETTRVIMPPMNQVSAIMKKEELLIDSLKAEARREVSVDCEGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01295881;
- 90% Identity
- iTF_00026197;
- 80% Identity
- iTF_00026197;