Pcoc007713.1
Basic Information
- Insect
- Pseudomyrmex concolor
- Gene Symbol
- lrrfip2
- Assembly
- GCA_014839585.1
- Location
- QVOB01012583.1:1729-7013[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.8e-115 1.1e-110 370.0 36.9 1 300 29 323 29 323 0.96 2 2 0.034 8.1e+02 -0.5 0.3 122 161 323 362 321 363 0.74
Sequence Information
- Coding Sequence
- ATGGAATCAGCTATAGCTGGACGAAGGCGGACTGCCACACGGCATTCTGCAGAAGATCAAGCGCTTGATCAAATAGCTAAAGAGGCAGAAGCAAGACTGGCTGCTAGGAGACAAGCAAGAGCGGAAGCCAGAGAAATACGAATGCGTGAATTGGAAAGACAACAGAAAGAAGCAGAAGAAAATGCTGACAGAGTTTACGATATGTGTACAGCTGATGTGAACAGAACCATGAGAGTAACTCCGGATCCGGTTCGTACATCACGACTTCTCACAAATTCCAACAATTTTCAATCAAGTCGCAGATCCTCGGAAGATTCGTTAGAAGATGCGGGATTAAGCAGAGATATGAGATTAGAATTGAAGGAATTCGAAGAAAAATTCAGGAAAGCAATGATAGCCAATGCTCAGTTAGACAACGAAAAATCATCTTACGCTTATCAAGTCGATTTGTTAAAAGATAAACTTGAAGAATTCGAAGAAACAACTGCACAGTTACGTAGGGAATTGAGAGAAAAGAATCGAGATGTTGAACAATTAAAACGAATCAGTCAAAGATTAAAGGAAGACTTAGATATTTACAGAGCACAATTATTAGAAAAAGATACGCTTATACAAGAAAACGGTTTAGTCATTGTTGATGAAGGAAGTGAGGATGAGGATAATGAAAATATAGGAAACGAGCCGTGTCGTAGAAAGAGGGTACTAGTCAGTACGGAAGCTGCAGAGTTATTAGAAACAGCTGGTAAAGGTTCATTAGATGTTCGACTGAGAAAATTTGCTTCCGAAAAAAAAGAATTGCAAGATGAAATTCGGCATTTAAGATTAGAACTTGAAGAAACTAGAAACCGTATGAGATCTGAAAGATCATCTGGTTACTTATCGGATAACGACGACGTTCAACGCGAAGCAAATAAATTGCTGGCGGATTATAAATTCAAATTACAAAAAGCAGAACAGGATACGTCCACGCTGCAAGCAACAGTAGCTAGATTGGAAAGTCAAGTAATTCGTTATAAATCAGCTGCGGAAGCGTCTGAAAAATCGGAAGATGAATTGAAAGTAGAAAAGAGGAAATTACAAAGAGAAGTATGA
- Protein Sequence
- MESAIAGRRRTATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCTADVNRTMRVTPDPVRTSRLLTNSNNFQSSRRSSEDSLEDAGLSRDMRLELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEEFEETTAQLRRELREKNRDVEQLKRISQRLKEDLDIYRAQLLEKDTLIQENGLVIVDEGSEDEDNENIGNEPCRRKRVLVSTEAAELLETAGKGSLDVRLRKFASEKKELQDEIRHLRLELEETRNRMRSERSSGYLSDNDDVQREANKLLADYKFKLQKAEQDTSTLQATVARLESQVIRYKSAAEASEKSEDELKVEKRKLQREV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01270497; iTF_01269797; iTF_01267561; iTF_01271210; iTF_01268268; iTF_01269055; iTF_01476915; iTF_00016034; iTF_01261829; iTF_00016678; iTF_00015367; iTF_00181959; iTF_01355305; iTF_01476169; iTF_00181300; iTF_01477561; iTF_00014716; iTF_00264993; iTF_00385314; iTF_01015810; iTF_00125923; iTF_00129741; iTF_00126711; iTF_01523355; iTF_00127454; iTF_00868099; iTF_00109826; iTF_01245219; iTF_00867396; iTF_00730733; iTF_00729300; iTF_00868795; iTF_00730054; iTF_01254792; iTF_00765579; iTF_00128973; iTF_00264269; iTF_01422926; iTF_01423656; iTF_01421554; iTF_01422230; iTF_01407279; iTF_01408211; iTF_01408212; iTF_01409111; iTF_01406490; iTF_01405693; iTF_01099184; iTF_00885105; iTF_00898738; iTF_00417555; iTF_01520224;
- 80% Identity
- -