Tsim023724.1
Basic Information
- Insect
- Tetramorium simillimum
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_011636635.1
- Location
- VBVQ01005072.1:10526-11938[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4e-91 5.3e-87 292.4 24.2 48 300 3 250 1 250 0.94 2 3 0.0072 96 2.7 3.6 122 171 250 299 249 303 0.91 3 3 0.11 1.4e+03 -1.2 6.9 194 238 281 324 268 325 0.55
Sequence Information
- Coding Sequence
- ATGAGAGTAACTCCGGATCCAGTGCGTACATCGCGACTTCTTACAAATTCCAACAATTTCCAGTCGAGTCGTAGGTCTTCAGAAGATTCATTAGAAGATGCAGGATTAAGCAGAGATATTAGGcTGGAATTGAAGGAATTTGAAGAAAAGTTTCGAAAGGCAATGATAGCTAATGCTCAGCTAGACAATGAAAAATCATCGTATGCCTATCAAGTTGATTTATTAAAGGATAAATTGGAAGAATTGGAAGAAACCACTGCGCAACTGCGCAGAgaattgagagagaaaaatcgagATGTGGAGCAGTTGAAACGGGTCAGTCAAAGACTAAAAGAAGATTTAGATATTTGCAAAGCGCAGTTACTAGAAAGAGATACACTTATACAAgAAAACGGTTTAGTCATTGTTGACAATAAAGAAAGTGAAGATGAGGATaacgaaaatattgaaaatggaTTATGTCATAGAAAGAGGGTACTAGTCAGTACAGAAGCTGCAGAATTATTAGAAACGGCTGGTAGAGGTTCACtagATATCCGACTGAGAAAGTTTGCTTCCGAGAAGAAGGAATTGCAAGATGAAATCCGCCATTTAAGATTGGAATTAGAAGAAACTAGAAATCGCGTGAGACCTGAAAAATCTGGCTCAATATTAGGTTTATCAGATAACGAAGATATTCAACGTgaagcaaataaattattggcCGATTATAAGTTTAAGTTACAAAAAGCGGAGCAAGACATGTCGACGCTGCAAGCGACAGTAGCTAGATTAGAAAGTCAAGTAATTCGTTATAAATCAGCCGCGGAAGCATCTGAAAAAGCAGAGGATGaattaaaagtagaaaaaagaaagttgcAAAGAGaagtaAGAGAAACACAAAGTCGTGTAGAGGAATTGGAGACGGCAAACTCTCATCTACAAAGGAGGTTGGATAAACTTAAAAACGCAAAATCGGCTCTCTTAAAAGAGCTTTGA
- Protein Sequence
- MRVTPDPVRTSRLLTNSNNFQSSRRSSEDSLEDAGLSRDIRLELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEETTAQLRRELREKNRDVEQLKRVSQRLKEDLDICKAQLLERDTLIQENGLVIVDNKESEDEDNENIENGLCHRKRVLVSTEAAELLETAGRGSLDIRLRKFASEKKELQDEIRHLRLELEETRNRVRPEKSGSILGLSDNEDIQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRETQSRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01266881;
- 80% Identity
- iTF_01422230; iTF_01421554;