Timm008520.1
Basic Information
- Insect
- Tetramorium immigrans
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_011636585.1
- Location
- VBVO01005730.1:2538-5782[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.1e-115 5.7e-111 371.2 36.5 1 300 29 326 29 326 0.96 2 3 0.0032 86 2.8 3.4 122 171 326 375 324 379 0.91 3 3 0.053 1.4e+03 -1.2 6.5 194 238 357 400 344 401 0.55
Sequence Information
- Coding Sequence
- atggAATCGGCTATAGCTGGGCGAAGGCGAACTGCTACACGGCATTCCGCAGAAGATCAAGCGCTCGATCAAATAGCCAAGGAGGCAGAAGCGAGACTAGCTGCTAGGAGACAGGCAAGAGCAGAAGCCAGAGAAATACGAATGCGTGAATTAGAAAGACAACAGAAAGAGGCAGAGGAGAATGCTGATAGAGTTTATGATATGTGTGCAGCCGATGTAAACAGAACTATGAGAGTAACTCCGGATCCAGTGCGTACATCGCGACTTCTTACAAATTCCAACAATTTCCAATCGAGTCGTAGGTCTTCAGAAGATTCATTGGAAGATGCAGGATTAAGCAGAGATATTAGGctgGAATTGAAGGAATTTGAAGAAAAGTTTCGAAAGGCAATGATAGCTAATGCTCAGCTAGACAATGAAAAATCATCGTATGCCTATCAAGTTGATTTATTAAAGGATAAATTGGAAGAATTGGAAGAAACCACTGCGCAATTGCGCAGAgaattgagagagaaaaatcgaGATGTGGAGCAGTTGAAACGGGTCAGTCAAAGACTGAAAGAAGATTTAGATATTTGCAAAGCGCAGTTACTAGAAAGAGATACACTTATACAAgAAAACGGTTTAGTCATTGTTGACAATAAAGAAAGTGAAGATGaggataatgaaaatattgaaaatggaTTATGTCATAGAAAGAGGGTACTAGTCAGTACAGAAGCTGCAGAATTATTAGAAACAGCTGGTAGAGGTTCACtagaTATCCGACTGAGAAAGTTTGCTTCTGAGAAGAAGGAATTGCAAGATGAAATCCGTCATTTAAGATTGGAATTAGAGGAAACTAGGAATCGCGTGAGACCTGAAAAATCTGGCTCAATATTAGGTTTATCAGATAACGAAGATATTCAACGtgaagcaaataaattattggcCGATTATAAGTTTAAGTTACAAAAAGCGGAGCAAGACATGTCGACGCTGCAAGCGACAGTAGCTAGATTAGAAAGTCAAGTAATTCGTTATAAATCAGCCGCGGAAGCATCTGAAAAAGCAGAGGATGaattaaaagtagaaaaaagaaagttgcAAAGAGAAgtaAGAGAAACACAAAGTCGTGTAGAGGAATTGGAGACAGCAAATTCTCATCTACAAAGGAGGTTGGATAAACTTAAAAACGCAAAATCAGCTCTCTTAAAAGAGCTTTGA
- Protein Sequence
- MESAIAGRRRTATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCAADVNRTMRVTPDPVRTSRLLTNSNNFQSSRRSSEDSLEDAGLSRDIRLELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEETTAQLRRELREKNRDVEQLKRVSQRLKEDLDICKAQLLERDTLIQENGLVIVDNKESEDEDNENIENGLCHRKRVLVSTEAAELLETAGRGSLDIRLRKFASEKKELQDEIRHLRLELEETRNRVRPEKSGSILGLSDNEDIQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRETQSRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01266881;
- 80% Identity
- iTF_01423656;