Pgra000414.1
Basic Information
- Insect
- Pseudomyrmex gracilis
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_002006095.1
- Location
- NW:59034-64167[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-114 4e-110 367.1 34.4 1 300 29 324 29 324 0.95 2 2 0.01 1.1e+02 1.2 4.7 122 171 324 373 321 377 0.90
Sequence Information
- Coding Sequence
- ATGGAATCAGCTATTGCTGGACGAAGGCGGACTGCCACACGGCATTCTGCAGAAGATCAAGCGCTTGATCAAATAGCTAAAGAGGCAGAAGCAAGACTGGCTGCTAGGAGACAAGCAAGAGCGGAAGCTAGAGAAATACGAATGCGTGAATTGGAGAGACAACAGAAAGAAGCGGAAGAAAACGCTGATAGAGTTTATGATATGTGTACAGcTGATGTGAATAGAACTATGAGAGTAACTCCGGATCCGGTTCGTACATCACGACTTCTCACAAATTCCAACAATTTTCAGCCAAGTCGTAGATCCTCGGAAGATTCGTTAGAAGATGCAGGATTAAGCAGAGATATGAGATTGGAATTGAAAGAATTCGAAGAGAAGTTCAGGAAAGCAATGATAGCCAATGCTCAGTTAGACAACGAAAAATCGTCTTACGCCTATCAAGTCGATTTGTTAAAAGATAAGCTTGAAGAATTCGAAGAAACAGCTGCACAGTTACGTAGGGaattgagagaaaagaatCGAGATGTGGAACAGTTAAAACGAATCAGTCAAAGATTAAAGGAAGACTTAGATATTTACAGAGCACAATTATTAGAAAGAGATACGCTTATACAAGAAAACGGTTTAGTCATTGTTGACGATGAGGGAAGTGAAGACGagaataatgaaaatttagGAAACGGACCGTGCCGTAGAAAGAGAGTACTAGTCAGTACGGAAGCTGCAGAGTTATTAGAAACGGCTGGTAAAGGCTCATTAGaTGTTCGACTGAGAAAATTTGCttccgaaaaaaaagaattgcagGATGAAATTCGGCATTTAAGATTAGAACTTGAAGAAACTAGAAACCGTATGAGATCTGAAAGATCATCTGGTTACTTATCGGACAACGACGACGTTCAACGCGAAGCAAATAAATTGTTGGCGGattataaattcaaattacaaaaagcgGAACAGGATACGTCCACGCTGCAAGCAACAGTAGCTAGATTGGAAAGTCAAGTAATTCGTTATAAGTCAGCTGCGGAAGCGTCTGAAAAATCGGAAGATGAATTGAAAGTAGAAAAGAGGAAATTGCAAAGAGAAataAGAGAAACACAAAATCGAGTAGAAGAGTTGGAAGCGGAAAACACACATCTACACAGGCGATTGGATAAAGTTAGAAATGCAAAGTCAAATCTCTTAAAGGAGCTTTGA
- Protein Sequence
- MESAIAGRRRTATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCTADVNRTMRVTPDPVRTSRLLTNSNNFQPSRRSSEDSLEDAGLSRDMRLELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEEFEETAAQLRRELREKNRDVEQLKRISQRLKEDLDIYRAQLLERDTLIQENGLVIVDDEGSEDENNENLGNGPCRRKRVLVSTEAAELLETAGKGSLDVRLRKFASEKKELQDEIRHLRLELEETRNRMRSERSSGYLSDNDDVQREANKLLADYKFKLQKAEQDTSTLQATVARLESQVIRYKSAAEASEKSEDELKVEKRKLQREIRETQNRVEELEAENTHLHRRLDKVRNAKSNLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01266881;
- 80% Identity
- -