Aflo014831.1
Basic Information
- Insect
- Aphaenogaster floridana
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_003063835.1
- Location
- NJRP01000567.1:1710-22209[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-116 2.6e-112 375.5 36.9 1 300 29 328 29 328 0.97 2 2 0.027 6.7e+02 -0.2 0.3 122 161 328 367 326 368 0.82
Sequence Information
- Coding Sequence
- atggaaTCAGCTATAACTGGGCGAAGGCGAACTGCTACACGACATTCTGCGGAAGATCAAGCACTCGATCAAATAGCTAAGGAGGCAGAAGCAAGACTGGCTGCTAGGAGACAGGCAAGAGCAGAAGCCAGGGAAATACGAATGCGTGAATTAGAAAGACAACAGAAAGAAGCAGAGGAGAATGCTGATAGGGTTTATGACATGTGTGCAGTTGATGTGAACAGAACTATGAGAGTAACTCCAGATCCAGTGCGTACATCGCGACTTCTTACAAATTCCAACAATTTTCAATCGAGTCGTAGATCTTCAGAAGATTCATTAGAAGATGCAGGATTAAGCAGAGATATTAGGcTGGAATTAAAGGAACTTGAAGAAAAATTCAGGAAGGCAATGATAGCTAATGCTCAGCTAGACAATGAAAAATCATCTTATGCCTACCAAGTTGATTTATTGAAAGATAAATTGGAAGAATTAGAGGAAACAACTGCACAATTACGTAGAGaattgagagagaaaaatcgAGATGTTGAACAATTAAAACGGGTCAGTCAAAGATTGAAAGAAGATTTAGATATTTGCAGAGCACAATTATTAGAAAGAGATACACTTATACAAgaAAACGGTTTAGTCATTGTTGACAATAAGGAAAGTGAAGATGAGGATaatgaaaatatggaaaatgGACTATGTCATAGAAAAAGAGTACTAGTCAGTACAGAAGCTGCTGAATTATTAGAAACGGCTGGTAAAGGTTCACTAGATATTCGACTGAGAAAGTTTGCTTCTGAAAAAAAGGAATTGCAAGATGAAATTCGCCATTTAAGATTGGAATTAGAAGAAACTAAAAATCGTATGAGACCCGAAAAATCATCTGGCTCAATATTAGGTTGTTTATCAGATAACGAAGATATTCAACGTGAAGCAAATAAATTGTTGGccgattataaatttaaattacaaaaagcgGAACAAGATATGTCTACGTTGCAAGCGACAGTGGCTAGATTAGAAAGTCAAGTAATTCGTTATAAATCAGCTGCAGAAGCATCTGAAAAAGCGGAAGATGAGTTGAAAGTAGAAAAAAGGAAGTTGCAAAGAGAAGTatga
- Protein Sequence
- MESAITGRRRTATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCAVDVNRTMRVTPDPVRTSRLLTNSNNFQSSRRSSEDSLEDAGLSRDIRLELKELEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEETTAQLRRELREKNRDVEQLKRVSQRLKEDLDICRAQLLERDTLIQENGLVIVDNKESEDEDNENMENGLCHRKRVLVSTEAAELLETAGKGSLDIRLRKFASEKKELQDEIRHLRLELEETKNRMRPEKSSGSILGCLSDNEDIQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01266881;
- 80% Identity
- iTF_00129741; iTF_00127454;