Trug031610.1
Basic Information
- Insect
- Temnothorax rugatulus
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_035220575.1
- Location
- JASTWL010000890.1:62997-68166[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-117 4.4e-113 378.9 35.6 1 300 29 328 29 328 0.98 2 2 0.018 2.2e+02 2.3 2.5 122 169 328 375 326 378 0.92
Sequence Information
- Coding Sequence
- ATGGAATCGGCTATAGCTGGGCGAAGGCGTACTGCCACACGGCATTCTGCAGAAGATCAAGCGCTCGATCAAATAGCTAAGGAGGCAGAAGCAAGACTGGCTGCTAGGAGACAGGCAAGAGCAGAAGCCAGGGAAATACGAATGCGTGAATTAGAAAGACAACAGAAAGAGGCAGAGGAGAATGCTGATAGGGTTTATGACATGTGTGCAGgCGATGTAAATAGAACTATGAGAGTAACTCCAGATCCAGTGCGTACATCACGACTTCTTACAAATTCCAACAATTTCCAATCAAGTCGTAGATCTTCAGAAGATTCATTGGAAGACGCAGGGTTAAGCAGAGATATTAGGATGGAATTAAAAGAATTTGAAGAAAAGTTCAGGAAGGCAATGATAGCTAATGCTCAGCTAGACAATGAAAAATCATCATATGCCTATCAAGTTGATTTATTAAAGGATAAATTGGAAGAATTAGAAGAAACCACTGCGCAATTACGTAGAGAATTGAGAGAGAAAAATCGAGATGTTGAGCAGTTAAAACGGGTCAGTCAAAGACTGAAAGAAGATTTAGATATTTGTAAAGCGCAATTACTAGAAAGAGATACACTTATACAAgaAAACGGTTTAGTCATTGTTGACAATAACGAAAGTGAAGATGAAGATaacgaaaatattgaaaatggaTTATGTCATAGAAAGAGGGTACTAGTCAGTACAGAAGCTGCAGAATTATTAGAGACGGCTGGTAAAGGTTCACtagATATTCGACTGAGAAAGTTTGCTTCGGAGAAAAAGGAATTGCAAGATGAAATTCGCCGTTTAAGATTGGAATTAGAAGAAACTAGGAGTCGCGCGAGACCCGAAAAATCATCTGGCTCAATATTAGGTTGTTTAACAGACAACGAAGATATTCAACGTGAAGCGAATAAATTATTGGccgattataaatttaaattacaaaaagcaGAACAAGATATGTCAACGTTGCAAGCGACAGTAGCTAGATTAGAAAGTCAAGTAATTCGTTATAAATCAGCTGCGGAAGCATCTGAAAAAGCAGAGGATGAATTGAAAGTAGAAAAAAGGAAGTTGCAAAGAGAAgtgAGAGAAACACAAAGCCCTCTTTTAAAAGAGCTTTGA
- Protein Sequence
- MESAIAGRRRTATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCAGDVNRTMRVTPDPVRTSRLLTNSNNFQSSRRSSEDSLEDAGLSRDIRMELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEETTAQLRRELREKNRDVEQLKRVSQRLKEDLDICKAQLLERDTLIQENGLVIVDNNESEDEDNENIENGLCHRKRVLVSTEAAELLETAGKGSLDIRLRKFASEKKELQDEIRRLRLELEETRSRARPEKSSGSILGCLTDNEDIQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRETQSPLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01266881;
- 80% Identity
- iTF_01408212;