Tzet008621.1
Basic Information
- Insect
- Trachymyrmex zeteki
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_001594055.1
- Location
- NW:174326-184146[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 7.6e-115 8.2e-111 369.3 35.5 1 300 29 327 29 327 0.96 2 3 0.0034 36 2.8 3.6 122 172 327 377 325 383 0.91 3 3 0.047 5e+02 -1.0 6.3 194 238 358 401 345 402 0.55
Sequence Information
- Coding Sequence
- atggaatCAGCTATAGCTGGGCGAAGACGAACTGCTACACGGCATTCTGCAGAAGACCAAGCACTTGATCAAATAGCTAAGGAGGCAGAAGCAAGACTGGCTGCTAGGAGACAAGCAAGAGCAGAAGCCAGAGAAATACGAATGCGTGAATTAGAAAGACAACAAAAAGAGGCAGAAGAGAATGCTGATAGAGTTTATGACATATGTGCAGTTGATATCAATAGAACCATGAGAGTAACTCCAGATCCAGTACGTACATCGCGACTTCTTACAAATTCCAATAATTTCCAATCGAGTCGTAGGTCTTCAGAGGATTCATTGGAAGATGCAGGATTAAGCAGAGATATTAGGttggaattaaaagaatttgaagaaaaatttagaaaggCTATGATAGCTAATGCTCAGTTAGACAATGAAAAATCATCTTATGCCTATCAAGTTGATttgttaaaagataaattggaAGAATTAGAGGAAACCACTACACAATTACGTAGAGAATTAAGAGAGAAGAATCGAGACGTTGAACAATTAAAACGGGTCAGTCAGCGATTGAAAGAagatttagatatttgcaGAGCGCAGTTACTAGAAAGAGATACACTTATACAAgaaAACGGTTTAGTCATTGTTGATAATAAGGAAAATGAAGATGAGGATaacgaaaatattgaaaatggattatgttataaaaagaagGTATTAGTCAGTATAGAAGCTGCAGAATTATTAGAAACGGCTGGTAAAGGTTCACtagaTATTCGACTGAGGAAATTTGCTTctgaaaaaaaggaattacAAGATGAGATTCGCCATTTAAGATTGGAATTAGAAGAAACTAGAAATCGCATGAGACCCGAAAAATCATCTGGTTCGATATTagGTTTATCAGATAACGAAGATATTCAACGTgaagcaaataaattattggccgattataaatttaaattacaaaaagcgGAACAAGATATGTCTACACTGCAAGCAACAGTAGCTAGACTAGAAAGTCAAGTAATTCGTTACAAATCAGCTGCAGAAGCATCTGAAAAAGCAGAAGATGAGTTGaaagtagaaaaaagaaagttgcAGAGAGAAgtaAGAGAAACACAAAGTCGTGTAGAAGAATTGGAGACAGCAAATTCTCATCTACAAAGGAGATTGGATAAACTTAAAAACGCTAAATCGGCTCTTCTAAAAGAGCTTTGA
- Protein Sequence
- MESAIAGRRRTATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDICAVDINRTMRVTPDPVRTSRLLTNSNNFQSSRRSSEDSLEDAGLSRDIRLELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEETTTQLRRELREKNRDVEQLKRVSQRLKEDLDICRAQLLERDTLIQENGLVIVDNKENEDEDNENIENGLCYKKKVLVSIEAAELLETAGKGSLDIRLRKFASEKKELQDEIRHLRLELEETRNRMRPEKSSGSILGLSDNEDIQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRETQSRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01266881;
- 80% Identity
- -