Lace022826.1
Basic Information
- Insect
- Leptothorax acervorum
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_035220615.1
- Location
- JASTWQ010000250.1:191947-194524[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 9.8e-93 4.8e-88 296.8 24.0 44 300 8 261 2 261 0.96 2 3 0.0045 2.2e+02 2.4 3.8 122 171 261 310 260 314 0.91 3 3 0.035 1.7e+03 -0.6 6.5 193 237 291 334 273 336 0.56
Sequence Information
- Coding Sequence
- atgaTTGTAGGCGATGTAAATAGAACTATGAGAGTAACTCCAGATCCAGTGCGTACATCACGACTTCTTACAAATTCCAACAATTTCCAATCAAGTCGTAGATCTTCAGAAGATTCATTGGAAGACGCAGGATTAAACAGAGATATTAGgctgGAATTAAAggaatttgaagaaaaattcAGGAAGGCAATGATAGCTAATGCTCAGCTAGACAATGAAAAATCATCATATGCCTATCAAGTTGACTTATTAAAGGATAAATTGGAAGAATTAGAAGAAACCACTGCGCAATTACGTAGAGAATTGAGAGAGAAAAATCGAGATGTTGAGCAGTTAAAACGGGTCAGTCAAAGACTGAAAGAAGATTTAGATATTTGTAAAGCGCAGTTACTAGAAAGAGATACACTTATACAAgaaaACGGTTTAGTCATTGTTGACAATAAGGAAAGTGAAGATGAGGATAacgaaaatattgaaaatgGATTATGCCATAGAAAGAGGATACTAATCAGTACAGAAGCTGCAGAATTATTAGAAACGGCTGGTAAAGGTTCATTAGATATTCGATTGAGAAAGTTTGCTTCGGAGAAAGAGGAATTGCAAGATGAAATTCGCCGTTTAAGATCGGAATTAGAAGAAACTAGGAATCGCGTGAGACCCGAAAAATCATCTGGCTCAATATTAGGTTGTTTAACAGATAACGAAGATATTCAACGTGAAGCGAATAAACTATTGGctgattataaatttaaattacaaaaaacgGAGCAAGATATGTCAACGCTGCAAGCAACAGTAGCTAGATTAGAAAGTCAAGTAATTCGTTATAAATCAGCTGCGGAAGCATCTGAAAAAGCAGAAGATGAATTGAAAGTAGAAAAAAGAAAGTTGCAAAGAGAAGTAAGAGAAACACAAAGTCGTGTAGAGGAATTAGAAACAGCAAACTCTCATCTACAAAGGAGGTTGGATAAACTTAAAAACGCTAAATCAGCTCTTTTAAAAGAACTTTGA
- Protein Sequence
- MIVGDVNRTMRVTPDPVRTSRLLTNSNNFQSSRRSSEDSLEDAGLNRDIRLELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEETTAQLRRELREKNRDVEQLKRVSQRLKEDLDICKAQLLERDTLIQENGLVIVDNKESEDEDNENIENGLCHRKRILISTEAAELLETAGKGSLDIRLRKFASEKEELQDEIRRLRSELEETRNRVRPEKSSGSILGCLTDNEDIQREANKLLADYKFKLQKTEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRETQSRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01266881;
- 80% Identity
- -