Ccot004311.1
Basic Information
- Insect
- Cyphomyrmex costatus
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_001594065.1
- Location
- NW:767357-774502[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-113 2.5e-109 364.6 36.3 1 300 29 326 29 326 0.95 2 2 0.021 2.5e+02 0.1 6.5 122 172 326 376 324 394 0.82
Sequence Information
- Coding Sequence
- atggaatCAGCTATAGCTGGACGAAAGCGAACTGCTACACGGCATTCTGCAGAAGACCAAGCACTTGATCAAATAGCTAAGGAGGCAGAAGCAAGACTGGCTGCTAGGAGACAGGCAAGAGCCGAAGCCAGGGATATACGAATGCGTGAATTAGAAAGACaacaaaaagaagcagaagaGAATGCTGATAGGGTGTATGACATTTGTGCAgTTGATATAAATAGAACCATGAGAGTAACTCCAGATCCAGTACGTACATCACGACTTACAAATTCCAATAATTTCCAATCGAGTCGTAGATCTTCAGAAGATTCATTGGAAGATGCAGGATTGAGCAGAGATATtaggctggaattaaaagaatttgaagAAAAGTTTAGAAAAGCTATGATAGCTAATGCTCAGTTAGACAATGAAAAATCGTCTTATGCCTACCAAGTTGATTTGTTGAAAGATAAATTGGAAGAATTAGAGGAAACCACTACACAATTACGTAGAGAATTAAGAGAGAAGAATCGAGATGTTGAACAATTAAAACGAGTCAGTCAACGTTTGAAAGAAGATTTAGATATTTGCAGAGCACAGTTATTAGAAAGAGATACACTTATACAAgaAAACGGTTTAGTCATTGTTGACAATAAGGAAAATGAAGATGAGGATAacgaaaatatcgaaaatggattatgtcataaaaaaaagttattagtcAGTACAGAAGCTGCAGAATTATTAGAAACGGCTGGTAAAGGTTCACtagATATTCGACTACGGAAATTTGCTTctgaaaaaaaggaattacAAGATGAGATTCGCCATTTAAGATTGGAATTAGAAGAAACTAGAAATCGCATGAGACCCGAAAAATCATCTGGTTCGATattagGTTTATCAGATAACGAAGATATTCAACGTgaagcaaataaattattggccgattataaatttaaattacaaaaagcaGAACAAGATATGTCTACACTGCAAGCAACAGTAGCTAGATTAGAAAGTCAAGTAATTCGTTACAAATCAGCTGCAGAAGCATCTGAAAAAGCAGAAGATGAGTTGAaagtagaaaaaagaaaattgcagAGAGAAgtaAGAGAAACACAAAGTCGTGTAGAGGAATTGGAGACAGCAAATTCTCATCTACAAAGGAGATTGGATAAACTTAAAAACGCTAAATCAGCTCTTCTAAAAGAGCTTTGA
- Protein Sequence
- MESAIAGRKRTATRHSAEDQALDQIAKEAEARLAARRQARAEARDIRMRELERQQKEAEENADRVYDICAVDINRTMRVTPDPVRTSRLTNSNNFQSSRRSSEDSLEDAGLSRDIRLELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEETTTQLRRELREKNRDVEQLKRVSQRLKEDLDICRAQLLERDTLIQENGLVIVDNKENEDEDNENIENGLCHKKKLLVSTEAAELLETAGKGSLDIRLRKFASEKKELQDEIRHLRLELEETRNRMRPEKSSGSILGLSDNEDIQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRETQSRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01266881;
- 80% Identity
- -