Fexs005048.1
Basic Information
- Insect
- Formica exsecta
- Gene Symbol
- lrrfip2
- Assembly
- GCA_003651465.1
- Location
- NW:1647051-1652957[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.9e-116 3.3e-112 374.0 33.6 1 300 29 329 29 329 0.96 2 3 0.0033 37 2.8 3.5 122 171 329 378 327 382 0.91 3 3 0.035 3.9e+02 -0.6 6.2 195 238 361 403 341 404 0.52
Sequence Information
- Coding Sequence
- ATGGAATCTGCTATAACTGGGCGAAGGAGGAATGCCACACGGCATTCTGCAGAAGATCAAGCGCTCGATCAAATAGCTAAGGAGGCAGAAGCAAGACTTGCTGCTAGGAGACAGGCAAGAGCGGAAGCTAGAGAAATACGAATGCGTGAATTAGAGAGACAACAAAAAGAGGCAGAAGAGAATGCTGACAGGGTTTATGACATGTGTACAGCTGATGTGAACAGAACTATGAGAGTAACCCCAGATCCAGTACGTACATCACGGCTTCTTACAAATTCTAACAATTTCCAATCAAGTCGCAGATCTTCAGAAGATTCACTAGAAGATGCAGGATTAAATAGAGATATTAGGCtggaattaaaagaatttgaaGAAAAGTTCAGGAAGGCAATGATAGCTAATGCTCAATTAGACAACGAAAAATCATCTTATGTCTATCAagttgatttattaaaagacaaaTTAGAAGAGTTAGAGGAAACAACTGTTCAATTACGTAGAGAATTGAGGGAAAAGAATCGAGATGTTGAACAATTAAAACGAGTCAATCAGAAATTAAAGGAAGATTTAGGTATTTGCAGGGCACAATTATTAGAAAGAGATACACTTATACAagaAAATGGCTTAATTATCATTGACAATGAAGGAAGCGAAGATgaagataatgaaaatattgaaaataggCCATATTGTAGAAAGAGGGTACTAGTCAGTACAGAAGCTGCAGAATTATTGGAAACAGCTGGTAAAGGTTCACTGGATGTCCGATTAAGAAAATttgcttttgaaaaaaaggaatTGCAAGATGAAATTCGACATTTAAGATTGGAACTGGAAGAAACTAGAAGTCGTATGAGATCCGAGAGATCATCTGGCTCAGTAATAGCAGGTTGCTTGTCAGAAAACGAAGATATTCAGCGTGAGGCAAATAAATTGTTAgcagattataaatttaaattacagaaagcaGAACAAGATATGTCCACACTACAAGCAACAGTAGCTAGATTGGAAAGTCAAGTAATTCGTTACAAATCAGCTGCAGAAGCATCTGAAAAAGCAGAAGATGAATTAAAAgtggaaaaaagaaagttacaaAGAGAAgtAAGAGAAACGCAAGCTCGTGTAGAAGAATTGGAGACAGCAAACTCTCATCTGCAAAGGCGATTGGATAAacttaaaaatgcaaaatcggCACTTTTAAAGGAGCTTTGA
- Protein Sequence
- MESAITGRRRNATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCTADVNRTMRVTPDPVRTSRLLTNSNNFQSSRRSSEDSLEDAGLNRDIRLELKEFEEKFRKAMIANAQLDNEKSSYVYQVDLLKDKLEELEETTVQLRRELREKNRDVEQLKRVNQKLKEDLGICRAQLLERDTLIQENGLIIIDNEGSEDEDNENIENRPYCRKRVLVSTEAAELLETAGKGSLDVRLRKFAFEKKELQDEIRHLRLELEETRSRMRSERSSGSVIAGCLSENEDIQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRETQARVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01266881;
- 80% Identity
- -