Tnyl009473.1
Basic Information
- Insect
- Temnothorax nylanderi
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_030848795.1
- Location
- JASTWM010000077.1:198489-203677[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.6e-117 1.5e-112 377.1 35.7 1 300 29 328 29 328 0.98 2 3 0.0062 1.4e+02 2.9 3.9 121 172 327 378 325 384 0.91 3 3 0.11 2.6e+03 -1.3 6.6 194 238 359 402 346 403 0.55
Sequence Information
- Coding Sequence
- ATGGAATCGGCTATAGCTGGGCGAAGGCGTACTGCCACACGGCATTCTGCAGAAGATCAAGCGCTCGATCAAATAGCTAAGGAGGCAGAAGCAAGACTGGCTGCTAGGAGACAGGCAAGAGCAGAAGCTAGGGAAATACGAATGCGTGAATTAGAAAGACAACAGAAAGAGGCAGAGGAGAATGCTGATAGGGTTTATGACATGTGTGCAGgcgATGTAAATAGAACTATGAGAGTAACTCCAGATCCAGTGCGTACATCACGACTTCTTACAAATTCCAACAATTTCCAATCAAGTCGTAGATCTTCAGAAGATTCATTGGAAGACGCAGGGTTAAGCAGAGATATTAGGatggaattaaaagaatttgaaGAAAAGTTCAGGAAGGCAATGATAGCTAATGCTCAGCTAGACAATGAAAAATCATCATATGCCTATCAAGTTGATTTATTAAAGGATAAATTGGAAGAATTAGAAGAAACCACTGCGCAATTACGTAGAGaattgagagagaaaaatcgaGATGTTGAGCAGTTAAAACGGGTCAGTCAAAGACTGAAAGAAGATTTAGATATTTGTAAAGCGCAATTACTAGAAAGAGATACACTTATACAAgaAAACGGTTTAGTCATTGTTGACAATAACGAAAGTGAAGATGAAGAtaacgaaaatattgaaaatggaTTATGTCATAGAAAGAGGGTACTAGTCAGTACAGAAGCTGCAGAATTATTAGAGACGGCTGGTAAAGGTTCACTagATATTCGACTGAGAAAGTTTGCTTCGGAGAAAAAGGAATTGCAAGATGAAATTCGCCGTTTAAGATTGGAATTAGAAGAAACTAGGAATCGCGCGAGACCCGAAAAATCATCTGGCTCAATCTTAGGTTGTTTAACAGATAACGAAGATATTCAACGTGAAGCGAATAAATTATTGGCcgattataaatttaaattacaaaaagcAGAGCAAGATATGTCAACGTTGCAAGCGACAGTAGCTAGATTAGAAAGTCAAGTAATTCGTTATAAATCAGCTGCGGAAGCATCTGAAAAAGCAGAGGATGAATTGAAAGTAGAAAAAAGGAAGTTGCAAAGAGAAgtaAGAGAAACACAAAGCCGTGTAGAAGAATTAGAAACAGCAAACTCTCATCTACAAAGGAGGTTGGATAAACTTAAAAACGCTAAATCAGCTCTTCTAAAAGAGCTTTGA
- Protein Sequence
- MESAIAGRRRTATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCAGDVNRTMRVTPDPVRTSRLLTNSNNFQSSRRSSEDSLEDAGLSRDIRMELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEETTAQLRRELREKNRDVEQLKRVSQRLKEDLDICKAQLLERDTLIQENGLVIVDNNESEDEDNENIENGLCHRKRVLVSTEAAELLETAGKGSLDIRLRKFASEKKELQDEIRRLRLELEETRNRARPEKSSGSILGCLTDNEDIQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRETQSRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01266881;
- 80% Identity
- iTF_01405693;