Lpla030337.1
Basic Information
- Insect
- Lasius platythorax
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_963971435.1
- Location
- OZ020543.1:4399942-4403627[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.8e-116 2.6e-111 373.3 36.2 1 300 29 328 29 328 0.97 2 3 0.0034 1.9e+02 2.7 3.8 121 171 327 377 325 380 0.92 3 3 0.047 2.5e+03 -1.0 6.4 195 238 360 402 346 403 0.51
Sequence Information
- Coding Sequence
- ATGGAATCAGCTATAGCTGGCCGAAGGAGGACTGCCACACGGCATTCTGCAGAAGATCAAGCCCTCGATCAAATAGCTAAGGAGGCAGAAGCAAGACTTGCTGCTAGGAGACAGGCAAGAGCAGAAGCTAGAGAAATACGAATGCGTGAGTTAGAGAGACAACAGAAAGAGGCGGAGGAGAATGCTGACAGGGTTTATGACATGTGTACAGCTGATGTGAACAGAACCATAAGAATAACCCCAGATCCAGTACGTACATCGCGACTTCTTACAAATTCCAACAATTTTCAATCAAGTCGTAGATCTTCAGAAGATTCACTAGAAGATGCAGGATTAAGTAGAGATATTAGGAtggaattaaaagaatttgaagaaaaattcagGAAGGCAATGATAGCTAATGCTCAATTAGACAACGAAAAATCATCTTATGTCTATCAAgttgatttattaaaagacaAATTAGAAGAATTAGAGGAAACAACTGTACAATTGCGTAGAGAATTGAGGGAAAAGAATCGAGATGTTGAACAATTAAAACGAgtcaatcaaaaattaaaagaagattTAGGTATTTGTCGGGCACAATTATTAGAAAGAGATACACTTATAcaaGAAAATGGCTTAATTATCGTTGACAATGAAGAAAGCGAAAAtgaagatgatgaaaatattgaaaatagatCATATTGTAGAAAGAGGGTACTAGTCAGTACAGAAGCTGCAGAATTATTGGAAACAGCTGGTAGAGGTTCACTAGATGTTCgattaagaaaatttgcttttgaaaaaaaggaaTTGCAAGATGAAATTCGACATTTAAGATTGGAACTGGAAGAAACTAGAAATCGCATGAGATCCGAGAGATCATCTGGCTCAGTATTAGGTTGCTTATCAGAAAACGAAGATATTCAGCGTGAAGCAAATAAATTGTTGgcagattataaatttaaattacaaaaagcagAACAAGATATGTCCACACTACAAGCAACAGTAGCTAGATTGGAAAGTCAAGTAATTCGTTACAAATCAGCTGCAGAAGCATCTGAAAAAGCAGAAGATGAATTAAAAgtggaaaaaagaaagttgCAAAGAGAAgtaAGAGAAACGCAAGCTCGTGTAGAAGAATTGGAGACAGCAAATTCTCATCTGCAAAGGCGATTAGATAAacttaaaaatgcaaaatcggCTCTTTTAAAAGAGCTTTGA
- Protein Sequence
- MESAIAGRRRTATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCTADVNRTIRITPDPVRTSRLLTNSNNFQSSRRSSEDSLEDAGLSRDIRMELKEFEEKFRKAMIANAQLDNEKSSYVYQVDLLKDKLEELEETTVQLRRELREKNRDVEQLKRVNQKLKEDLGICRAQLLERDTLIQENGLIIVDNEESENEDDENIENRSYCRKRVLVSTEAAELLETAGRGSLDVRLRKFAFEKKELQDEIRHLRLELEETRNRMRSERSSGSVLGCLSENEDIQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRETQARVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01266881;
- 80% Identity
- iTF_00867396;