Aash022842.1
Basic Information
- Insect
- Aphaenogaster ashmeadi
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_003063805.1
- Location
- NJRQ01000730.1:25856-32189[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.4e-117 2.1e-112 375.8 36.6 1 300 2 301 2 301 0.97 2 3 0.0032 80 2.8 3.7 122 172 301 351 299 357 0.91 3 3 0.046 1.1e+03 -1.0 6.6 193 237 331 374 313 376 0.56
Sequence Information
- Coding Sequence
- atgGCAGAAGCAAGACTGGCTGCTAGGAGACAGGCAAGAGCAGAAGCCAGGGAAATACGAATGCGTGAATTAGAAAGACAACAGAAAGAAGCAGAGGAGAATGCTGATAGGGTTTATGACATGTGTGCAGTTGATGTGAACAGAACTATGAGAGTAACTCCAGATCCAGTGCGTACATCGCGACTTCTTACAAATTCCAACAATTTTCAATCGAGTCGTAGATCTTCAGAAGATTCATTAGAAGATGCAGGATTAAGCAGAGATATTAGGCTGGAATTAAaggaatttgaagaaaaattcaGGAAGGCAATGATAGCTAATGCTCAGCTAGACAATGAAAAATCATCTTATGCCTACCAAGTTGATTTATTGAAAGATAAATTGGAAGAATTAGAGGAAACAACTGCACAATTACGTAGAGaattgagagagaaaaatcgaGATGTTGAACAATTAAAACGGGTCAGTCAAAGATTGAAAGAAGATTTAGATGTTTGCAGAGCACAattattagaaagagataCACTTATAcaagaAAACGGTTTAGTCATTGTTGACAATAAGGAAAGTGAAGATGAGGATAatgaaaatatggaaaatgGACTATGTCATAGAAAAAAAGTACTAGTCAGTACAGAAGCTGCTGAATTATTAGAAACGGCTGGTAAAGGTTCACTAGATATTCGACTGAGAAAGTTTGCTTCTGAAAAAAAGGAATTGCAAGATGAAATTCGCCATTTAAGATTGGAATTAGAAGAAACTAAAAATCGTATGAGACCCGAAAAATCATCTGGCTCAATATTAGGTTGTTTATCAGATAACGAAGATATTCAACGTGAAGCAAATAAATTGTTGGccgattataaatttaagttaCAAAAAGCGGAGCAAGATATGTCTACGTTGCAAGCCACAGTGGCTAGATTAGAAAGTCAAGTAATTCGTTATAAATCAGCTGCAGAAGCATCTGAAAAAGCGGAAGATGAGTTGAAAGTAGAAAAAAGGAAGTTGCAAAGAGAAgtaAGAGAAACACAAAGTCGTGTAGAAGAATTGGAGACAGCAAATTCTCATCTACAAAGGAGATTGGATAAACTTAAAAATGCTAAATCAGCTCTTTTGAAAGAGCTTTGA
- Protein Sequence
- MAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCAVDVNRTMRVTPDPVRTSRLLTNSNNFQSSRRSSEDSLEDAGLSRDIRLELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEETTAQLRRELREKNRDVEQLKRVSQRLKEDLDVCRAQLLERDTLIQENGLVIVDNKESEDEDNENMENGLCHRKKVLVSTEAAELLETAGKGSLDIRLRKFASEKKELQDEIRHLRLELEETKNRMRPEKSSGSILGCLSDNEDIQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRETQSRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01266881;
- 80% Identity
- -