Fsel015048.1
Basic Information
- Insect
- Formica selysi
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_009859135.1
- Location
- CM020806.1:106308-111219[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.2e-117 1.7e-112 376.5 33.6 1 300 29 328 29 328 0.97 2 3 0.0039 1.2e+02 2.5 3.8 122 172 328 378 326 383 0.91 3 3 0.048 1.5e+03 -1.0 6.7 195 238 360 402 339 403 0.53
Sequence Information
- Coding Sequence
- ATGGAATCTGCTATAACTGGGCGAAGGAGGAATGCCACACGGCATTCTGCAGAAGATCAAGCGCTCGATCAAATAGCTAAGGAGGCTGAAGCAAGACTTGCTGCTAGGAGACAGGCAAGAGCGGAAGCTAGAGAAATACGAATGCGTGAATTAGAGAGACAACAAAAAGAGGCAGAAGAGAATGCTGACAGGGTTTATGACATGTGTACAGCTGATGTGAACAGAACTATGAGAGTAACCCCAGATCCAGTACGTACATCACGGCTTCTTACAAATTCCAACAATTTCCAATCAAGTCGCAGATCTTCAGAAGATTCACTAGAAGATGCAGGATTAAATAGAGATATTAGGCtggaattaaaagaatttgaaGAAAAGTTCAGGAAGGCAATGATAGCTAATGCTCAATTAGACAACGAAAAATCATCTTATGTCTATCAAgttgatttattaaaagacaaaTTAGAAGAGTTAGAGGAAACAACTGTTCAATTACGTAGAGAATTGAGGGAAAAGAATCGAGATGTTGAACAATTAAAACGAGTCaatcagaaattaaaagaagattTAGGTATTTGCAGGGCACAATTATTAGAAAGAGATACACTTATACAAgaAAATGGCTTAATTATCATTGACAATGAAGGAAGCGAAGATgaagataatgaaaatattgaaaataggCCATATTGTAGAAAGAGGGTACTAGTCAGTACAGAAGCTGCAGAATTATTGGAAACAGCTGGTAAAGGTTCACTGGATGTCCGATTAAGAAAATTTGcttttgaaaaaaaggaaTTGCAAGATGAAATTCGACATTTAAGATTGGAACTGGAAGAAACTAGAAGTCGTATGAGATCCGAGAGATCATCTGGCTCAGTAATAGGTTGCTTGTCAGAAAACGAAGATATTCAGCGTGAGGCAAATAAATTGTTAGcagattataaatttaaattacagaaagcaGAACAAGATATGTCCACACTACAAGCAACAGTAGCTAGATTGGAAAGTCAAGTAATTCGTTACAAATCAGCTGCAGAAGCATCTGAAAAAGCAGAAGATGAATTAAAAGtggaaaaaagaaagttaCAAAGAGAAgtAAGAGAAACGCAAGCTCGTGTAGAAGAATTGGAGACAGCAAACTCTCATCTGCAAAGGCGATTGGATAAacttaaaaatgcaaaatcggCACTTTTAAAGGAGCTTTGA
- Protein Sequence
- MESAITGRRRNATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCTADVNRTMRVTPDPVRTSRLLTNSNNFQSSRRSSEDSLEDAGLNRDIRLELKEFEEKFRKAMIANAQLDNEKSSYVYQVDLLKDKLEELEETTVQLRRELREKNRDVEQLKRVNQKLKEDLGICRAQLLERDTLIQENGLIIIDNEGSEDEDNENIENRPYCRKRVLVSTEAAELLETAGKGSLDVRLRKFAFEKKELQDEIRHLRLELEETRSRMRSERSSGSVIGCLSENEDIQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRETQARVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01266881;
- 80% Identity
- iTF_00729300;