Pfla001663.1
Basic Information
- Insect
- Pseudomyrmex flavicornis
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_014825475.1
- Location
- QVNW01003439.1:3903-7130[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.4e-115 1e-110 370.1 35.6 1 300 29 324 29 324 0.95 2 2 0.011 2.6e+02 1.1 4.8 122 171 324 373 321 379 0.89
Sequence Information
- Coding Sequence
- ATGGAATCAGCTATAGCTGGACGAAGGCGGACTGCCACACGGCATTCTGCAGAAGATCAAGCACTTGATCAAATAGCTAAAGAGGCAGAAGCAAGACTGGCTGCTAGGAGACAAGCAAGAGCGGAAGCCAGAGAAATACGAATGCGTGAATTGGAGAGACAACAGAAAGAAGCGGAAGAAAATGCTGACAGAGTTTACGATATGTGTACAGCTGATGTGAACAGAACTATGAGAGTAACTCCGGATCCGGTTCGTACATCACGACTTCTCACAAATTCCAACAATTTTCAGTCAAGTCGCAGATCCTCGGAAGATTCGTTAGAAGATGCGGGATTAAGCAGAGATATGAGATTGGAATTGAAGGAATTCGAAGAGAAGTTCAGGAAAGCAATGATAGCCAATGCTCAGTTAGACAACGAAAAATCGTCTTACGCCTATCAAGTTGATTTGTTAAAAGATAAACTTGAAGAATTCGAAGAAACAACTGCACAGTTACGTAGAGAATTGAGAGAAAAGAATCGAGATGTTGAACAATTAAAACGAATCAGTCAAAGATTAAAGGAAGATTTAGATATTTACAGAGCACAATTATTAGAAAGAGATACGCTTATACAAGAAAACGGTTTAGTTATTGTTGATGATGAAGGAAGTGAGGACGAGGATAATGAAAATATAGGAAACGGGCCGTGTCGTAGAAAGAGGGTACTAGTCAGTACGGAAGCTGCAGAGTTATTAGAAACGGCTGGTAAAGGTTCATTAGATGTTCGACTGAGAAAATTTGCTTCCGAAAAAAAAGAATTGCAAGATGAAATTCGGCATTTAAGATTAGAACTTGAAGAAACTAGAAACCGTATGAGATCTGAAAGATCATCTGGTTACTTATCGGATAACGACGACGTTCAACGCGAGGCAAATAAATTGCTGGCGGATTATAAATTCAAATTACAAAAAGCGGAACAGGATACGTCCACGCTGCAAGCAACAGTAGCTAGATTGGAAAGTCAAGTAATTCGTTATAAATCAGCTGCGGAAGCGTCTGAAAAATCGGAAGATGAATTGAAAGTAGAAAAGAGAAAATTGCAAAGAGAAATAAGAGAAACACAAAATCGAGTAGAAGAGTTGGAAGCAGAAAACACACATCTACACAGGCGATTGGATAAAGTTAGAAATGCAAAGTCAAATCTCTTAAAGGAGCTTTGA
- Protein Sequence
- MESAIAGRRRTATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCTADVNRTMRVTPDPVRTSRLLTNSNNFQSSRRSSEDSLEDAGLSRDMRLELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEEFEETTAQLRRELREKNRDVEQLKRISQRLKEDLDIYRAQLLERDTLIQENGLVIVDDEGSEDEDNENIGNGPCRRKRVLVSTEAAELLETAGKGSLDVRLRKFASEKKELQDEIRHLRLELEETRNRMRSERSSGYLSDNDDVQREANKLLADYKFKLQKAEQDTSTLQATVARLESQVIRYKSAAEASEKSEDELKVEKRKLQREIRETQNRVEELEAENTHLHRRLDKVRNAKSNLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01266881;
- 80% Identity
- iTF_01267561; iTF_01268268; iTF_01269055;