Lnig011242.1
Basic Information
- Insect
- Lasius niger
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_001045655.1
- Location
- LBMM01011402.1:377-5108[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5e-116 9e-112 373.2 36.2 1 300 35 334 35 334 0.97 2 3 0.004 72 2.5 3.6 122 171 334 383 332 386 0.92 3 3 0.051 9.1e+02 -1.1 6.5 195 238 366 408 352 409 0.51
Sequence Information
- Coding Sequence
- ATGGAATCAGCTATAGCTGGCCGAAGGAGGACTGCCACACGGCATTCTGCAGAAGATCAAGCCCTCGATCAAATAGCTAAGGAGacaaatatatatctccaGGCAGAAGCAAGACTTGCTGCTAGGAGACAGGCAAGAGCAGAAGCTAGAGAAATACGAATGCGTGAGTTAGAGAGACAACAGAAAGAGGCGGAGGAGAATGCTGACAGGGTTTATGACATGTGTACAGCTGATGTGAACAGAACCATAAGAATAACCCCAGATCCAGTACGTACATCGCGACTTCTTACAAATTCCAACAATTTTCAATCAAGTCGTAGATCTTCAGAAGATTCACTAGAAGATGCAGGATTAAGTAGAGATATTAGGAtggaattaaaagaatttgaagaaaaattcagGAAGGCAATGATAGCTAATGCTCAATTAGACAACGAAAAATCATCTTATGTCTATCaagttgatttattaaaagacaAATTAGAAGAATTAGAGGAAACAACTGTACAATTGCGTAGAGAATTGAGGGAAAAGAATCGAGATGTTGAACAATTAAAACGAgtcaatcaaaaattaaaagaagatttaGGTATTTGTCGGGCACAATTATTAGAAAGAGATACACTTATacaaGAAAATGGCTTAATTATCGTTGACAATGAAGAAAGCGAAAAtgaagatgatgaaaatattgaaaatagatCATATTGTAGAAAGAGGGTACTAGTCAGTACAGAAGCTGCAGAATTATTGGAAACAGCTGGTAGAGGTTCACTAGATGTtcgattaagaaaatttgcttttgaaaaaaaggaattacaAGATGAAATTCGACATTTAAGATTGGAACTGGAAGAAACTAGAAATCGCATGAGATCCGAGAGATCATCTGGCTCAGTATTAGGTTGCTTATCAGAAAACGAAGATATTCAGCGTGAAGCAAATAAATTGTTGgcagattataaatttaaattacaaaaagcaGAACAAGATATGTCCACACTACAAGCAACAGTAGCTAGATTGGAAAGTCAAGTAATTCGTTACAAATCAGCTGCAGAAGCATCTGAAAAAGCAGAAGATGAATTAAAAgtggaaaaaagaaagttgcAAAGAGAAgtaAGAGAAACGCAAGCTCGTGTAGAAGAATTGGAGACAGCAAATTCTCATCTGCAAAGGCGATTagataaacttaaaaatgcaaaatcggCTCTTTTAAAAGAGCTTTGA
- Protein Sequence
- MESAIAGRRRTATRHSAEDQALDQIAKETNIYLQAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCTADVNRTIRITPDPVRTSRLLTNSNNFQSSRRSSEDSLEDAGLSRDIRMELKEFEEKFRKAMIANAQLDNEKSSYVYQVDLLKDKLEELEETTVQLRRELREKNRDVEQLKRVNQKLKEDLGICRAQLLERDTLIQENGLIIVDNEESENEDDENIENRSYCRKRVLVSTEAAELLETAGRGSLDVRLRKFAFEKKELQDEIRHLRLELEETRNRMRSERSSGSVLGCLSENEDIQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRETQARVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01266881;
- 80% Identity
- -