Obir006237.1
Basic Information
- Insect
- Ooceraea biroi
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_003672135.1
- Location
- NC:2759816-2773517[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.8e-117 3.2e-113 377.3 35.0 1 300 29 331 29 331 0.98 2 3 0.0022 25 3.4 3.1 121 171 330 380 328 384 0.92 3 3 0.05 5.7e+02 -1.1 5.6 194 238 362 405 349 406 0.57
Sequence Information
- Coding Sequence
- ATGGAATCAGCTATAGCTGGGCGAAGGCGAACAGCCACGCGGCATTCTGCGGAAGATCAAGCACTCGATCAAATAGCTAAGGAGGCAGAAGCAAGGCTGGCTGCTAGAAGACAGGCAAGGGCAGAAGCCAGAGAGATACGAATGCGCGAGCTGGAGAGGCAGCAGAAAGAGGCGGAGGAGAATGCCGACAGGGTTTATGACATGTGCGCAGGTAGTTCAACCGACGTGAACAGAACCATGAGAGTAACTCCGGACCCGGTGCGCACGTCGCGGCTTCTGACGAATTCCAACAACTTCCAGTCGAGTCGTAGATCCTCGGAGGATTCACTGGAAGATGCAGGATTAAGTAGGGATATTAGGCTGGAATTAAAGGAATTTGAAGAGAAATTCAGAAAGGCCATGATAGCGAACGCTCAGTTAGACAATGAGAAATCGTCTTACGCCTACCAAGTCGATTTATTAAAAGACAAATTGGAGGAGCTGGAGGAAACAACGGCACAATTGCGTAGGGAattgagagagaagaatcgagaCGTCGAACAATTGAAACGGGCCAATCAGAGATTGAAGGAGGATTCGGACATCTGCAGAGCACAGTTATTAGAAAGGGATACGCTTATACAAgAAAACGGCTTAGTCATTGTTGACGATGAAGGAAGCGAGGATGAAGAgaatagaaatattgaaaatggaCCATGTCATGGAAGAAGAGTACTAGTCAGTACAGAAGCTGCAGAATTATTAGAAACCGCTGGTAAAGGTTCCCTAGATGTTCGACTGAGAAAATTTGCCTCCGAGAAGAAGGAATTGCAAGATGAAATTCGACATTTAAGATTAGAGCTGGAAGAGACCAGAAATCGCGTGAGATCCGAGAGATCATCTGGCTCAGTATTAGGTTCCTTGTCGGATAACGAAGATATTCAGCGTGAGGCAAACAAGTTGCTGGcggattataaatttaaattacaaaaggCGGAGCAAGACATGTCCACGCTGCAGGCGACGGTAGCTAGACTGGAGAGCCAAGTAATTCGTTACAAGTCGGCTGCAGAGGCGTCTGAGAAAGCCGAGGATGAACTGAAGGTGGAGAAAAGGAAGCTGCAACGAGAGGTGAGGGAGACGCAGGGTCGCGTAGAGGAATTGGAGACCGCGAATTCTCATCTGCAGAGGCGATTGGATAAACTTAAAAATGCTAAATCCGCTCTGCTGAAGGAGCTCTGA
- Protein Sequence
- MESAIAGRRRTATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCAGSSTDVNRTMRVTPDPVRTSRLLTNSNNFQSSRRSSEDSLEDAGLSRDIRLELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEETTAQLRRELREKNRDVEQLKRANQRLKEDSDICRAQLLERDTLIQENGLVIVDDEGSEDEENRNIENGPCHGRRVLVSTEAAELLETAGKGSLDVRLRKFASEKKELQDEIRHLRLELEETRNRVRSERSSGSVLGSLSDNEDIQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRETQGRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01266881;
- 80% Identity
- -