Tcor001139.1
Basic Information
- Insect
- Trachymyrmex cornetzi
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_001594075.1
- Location
- NW:318900-339821[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.9e-115 7.1e-111 369.7 36.3 1 300 29 327 29 327 0.96 2 3 0.0034 40 2.8 3.6 122 172 327 377 325 383 0.91 3 3 0.047 5.6e+02 -1.0 6.3 194 238 358 401 345 402 0.55
Sequence Information
- Coding Sequence
- atggaatCAGCTATAGCTGGGCGAAGGCGAACTGCTACACGGCATTCTGCAGAAGACCAAGCACTTGATCAAATAGCTAAGGAGGCAGAAGCAAGACTGGCTGCTAGGAGACAGGCAAGAGCAGAAGCCAGGGAAATACGAATGCGTGAATTAGAAAGACAACAAAAAGAGGCAGAAGAAAATGCTGATAGGGTTTACGACATATGTGCAGTTGATATAAATAGAACCATGAGAGTAACTCCAGATCCAGTACGTACATCGCGACTTCTTACAAATTCCAATAATTTCCAATCGAGTCGTAGATCTTCAGAAGATTCATTGGAAGATGCAGGATTAAGCAGAGATATTAGGctggaattaaaagaatttgaagaaaaatttagaaaggcTATGATAGCTAATGCTCAGTTAGACAATGAAAAATCATCTTATGCCTACCAAGTTGATTTGTTAAAAGATAAATTGGAAGAATTAGAGGAAACCACTACACAATTGCGTAGagaattaagagaaaaaaatcgagATGTTGAACAATTAAAACGGGTCAGTCAGCGATTGAAAGAAGATTTAGATATTTGCAGAGCGCAATTACTAGAAAGAGATACACTTATACAAgaAAACGGTTTAGTTATTGTTGATAATAAGGAAAATGAAGATGAGGATaacgaaaatattgaaaatggaTTATGTCATAAAAAGAAGGTATTAGTCAGTACAGAAGCTGCAGAATTATTAGAAACAGCTGGTAAAGGTTCACTAGATATTCGACTGAGGAAATTTGCTTCTGAAAAAAAGGAATTGCAAGATGAGATTCGCCATTTAAGATTGGAATTAGAAGAAACTAGAAATCGCATGAGACCCGAAAAATCATCTGGTTCGATATTAGGTTTATCAGATAACGAAGATATTCAACGTGAAGCAAATAAATTATTGGccgattataaatttaaattacaaaaagcaGAACAAGATATGTCCACACTGCAAGCAACAGTAGCTAGACTAGAAAGTCAAGTAATTCGTTACAAATCAGCTGCAGAAGCATCTGAAAAAGCAGAAGATGAGTTGAAAGTAGAAAAAAGAAAGTTGCAGAGAGAAgtaAGAGAAACACAAAGTCGTGTAGAGGAATTGGAGACCGCAAATTCTCATCTACAAAGGAGATTGGATAAACTTAAAAATGCTAAATCGGCTCTTCTAAAAGAGCTTTGA
- Protein Sequence
- MESAIAGRRRTATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDICAVDINRTMRVTPDPVRTSRLLTNSNNFQSSRRSSEDSLEDAGLSRDIRLELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEETTTQLRRELREKNRDVEQLKRVSQRLKEDLDICRAQLLERDTLIQENGLVIVDNKENEDEDNENIENGLCHKKKVLVSTEAAELLETAGKGSLDIRLRKFASEKKELQDEIRHLRLELEETRNRMRPEKSSGSILGLSDNEDIQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRETQSRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01266881;
- 80% Identity
- iTF_00016034;