Pare007796.1
Basic Information
- Insect
- Pseudoatta argentina
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_017607525.1
- Location
- JAANIA010002862.1:229414-241297[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.8e-114 1.6e-110 368.2 36.1 1 300 29 327 29 327 0.96 2 3 0.0038 35 2.6 3.7 122 171 327 376 325 380 0.91 3 3 0.051 4.8e+02 -1.1 6.4 194 238 358 401 345 402 0.55
Sequence Information
- Coding Sequence
- atggaATCAGCTATAGCTGGGCGAAGGCGAACTGCTACACGGCATTCTGCAGAAGATCAAGCACTTGATCAAATAGCTAAGGAGGCAGAAGCAAGACTGGCTGCTAGGAGACAGGCAAGAGCAGAAGCCAGGGAAATACGAATGCGTGAATTAGAAAGACAACAAAAAGAGGCAGAAGAGAATGCTGATAGGGTTTACGACATATGTGCAgTTGATATAAATAGAACCATGAGAGTAACTCCAGATCCAGTACGTACATCGCGACTTCTTACAAATTCCAATAATTTCCAATCGAGTCGTAGATCTTCAGAAGATTCATTGGAAGATGCAGGATTAAGCAGAGATATTAGGctggaattaaaagaatttgaagaaaaatttagaaaggCTATGATAGCTAATGCTCAGTTAGACAATGAAAAATCATCTTATGCCTACCAAGTTGATttgttaaaagataaattggaAGAATTAGAGGAAACCACTACACAATTACGTAgagaattaagagaaaaaaatcgagaTGTTGAACAATTAAAACGGGTCAGTCAGCGATTGAAAGAAGATTTAGATATTTGCAGAGCGCAATTACTAGAAAGAGATACACTTATTCAAgaAAACGGTTTAGTTATTGTTGATAATAAGGAAAATGAAAGTGAGGATaacgaaaatattgaaaatggatTATGTCATAAAAAGAAGGTATTAATCAGTACAGAAGCTGCAGAATTATTAGAAACAGCTGGTAAAGGTTCACTagaTATTCGACTGAGGAAATTTGCTTctgaaaaaaaggaattgcAAGATGAAATTCGTCATTTAAGATTGGAATTAGAAGAAACTAGAAATCGCATGAGACCCGAAAAATCATCTGGTTCGATATTAGGTTTATCAGATAACGAAGATATTCAACGTgaagcaaataaattattggccgattataaatttaaattacaaaaagcgGAACAAGATATGTCTACACTGCAAGCAACAGTAGCTAGACTAGAAAGTCAAGTAATTCGTTACAAATCAGCTGCAGAAGCATCTGAAAAAGCAGAAGATGAGTTGaaagtagaaaaaagaaagttgcAGAGAGAAgTAAGAGAAACACAAAGTCGTGTAGAGGAATTGGAGACAGCAAATTCTCATCTACAAAGGAGATTGGATAAACTTAAAAACGCTAAATCAGCTCTTCTAAAAGAGCTT
- Protein Sequence
- MESAIAGRRRTATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDICAVDINRTMRVTPDPVRTSRLLTNSNNFQSSRRSSEDSLEDAGLSRDIRLELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEETTTQLRRELREKNRDVEQLKRVSQRLKEDLDICRAQLLERDTLIQENGLVIVDNKENESEDNENIENGLCHKKKVLISTEAAELLETAGKGSLDIRLRKFASEKKELQDEIRHLRLELEETRNRMRPEKSSGSILGLSDNEDIQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRETQSRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01266881;
- 80% Identity
- -