Pimp029582.1
Basic Information
- Insect
- Prenolepis imparis
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_030444845.1
- Location
- JAUDTA010000011.1:13883959-13888081[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.7e-116 3.4e-111 372.8 35.8 1 300 29 328 29 328 0.97 2 3 0.0074 3.8e+02 1.6 4.9 122 172 328 378 326 388 0.90 3 3 0.074 3.7e+03 -1.6 6.5 196 237 361 401 346 403 0.46
Sequence Information
- Coding Sequence
- ATGGAATCAACTATAGCTGGTCGAAGGAGGACTGCCACAAGGCATTCTGCGGAAGATCAAGCATTGGATCAGATAGCTAAGGAGGCAGAAGCAAGACTTGCTGCTAGGAGACAGGCGAGAGCAGAAGCTAGAGAAATACGAATGCGTGAATTGGAGAGACAGCAAAAAGAGGCGGAGGAGAATGCTGATAGGGTTTACGACATGTGTGCAGCTGATGTAAACAGAACCATGAGAATAACTCCAGATCCAGTACGTACATCGCGACTTCTTACAAAttccaataattttcaatcaaGTCGTAGATCTTCAGAAGATTCATTAGAAGATGCAGGATTAAATAGAGATATTAGGttggaattaaaagaatttgaagaaaaattcaGGAAGGCAATGATAGCTAATGCTCAATTAGACAACGAAAAATCATCTTATGTCTATCAAgttgatttattaaaagacAAATTAGAAGAATTAGAGGAAACAACTGTACAATTACGTAGAGAATTGAGGGAAAAGAATCGAGATGTTGAGCAATTTAAACGAGTCAATCAGAAATTAAAAGACGATTTAGGTATTTGTCGGGCACAATTATTAGAAAGAGATACACTTATACaagAAAATGGCTTAATTATCGTTGACAATGAAGAAAGCGAAGATgaagataatgaaaatatggaaaatagATCATATTGTAGAAAGAGGGTACTAGTCAGTACAGAAGCTGCAGAATTATTGGAAACAGCTGGTAGAGGTTCACTAGATGTTAGATTAAGAAAATTTGCTTCTGAACAAAAGGAATTGCAAGATGAAATTCGACATTTAACATTGGAACTGGAAGAAACTAGAAATCGTGTGAGATCCGAAAGATCATCTGGCTCAGTATTAGGTTGCTTATCAGAAAACGATGATATTCAGCGTGAAGCAAACAAATTGTTGGcagattataaatttaaattacaaaaagcAGAACAAGATATGTCCACACTACAAGCAACAGTAGCTAGATTGGAAAGTCAAGTAATTCGTTACAAATCAGCTGCAGAAGCATCTGAAAAAGCAGAAGATGAATTAAAagtggaaaaaagaaaattgcaaAGAGAAgtaAGAGAAACGCAAGCTCGTGTAGAAGAATTGGAGACTGCAAACACGCATCTTCAAAAACGATtagataaacttaaaaatgcaaaatcggCTCTTTTAAAAGAACTTTGA
- Protein Sequence
- MESTIAGRRRTATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCAADVNRTMRITPDPVRTSRLLTNSNNFQSSRRSSEDSLEDAGLNRDIRLELKEFEEKFRKAMIANAQLDNEKSSYVYQVDLLKDKLEELEETTVQLRRELREKNRDVEQFKRVNQKLKDDLGICRAQLLERDTLIQENGLIIVDNEESEDEDNENMENRSYCRKRVLVSTEAAELLETAGRGSLDVRLRKFASEQKELQDEIRHLTLELEETRNRVRSERSSGSVLGCLSENDDIQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRETQARVEELETANTHLQKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01266881;
- 80% Identity
- -