Sinv000114.1
Basic Information
- Insect
- Solenopsis invicta
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_016802725.1
- Location
- NC:5008760-5083422[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.1e-115 1.5e-111 372.1 35.2 1 300 29 327 29 327 0.97 2 3 0.0049 68 2.2 3.6 122 171 327 376 326 380 0.91 3 3 0.062 8.8e+02 -1.4 6.2 196 237 360 400 349 402 0.52
Sequence Information
- Coding Sequence
- atggaATCAGCTGTAGCTGGACGAAGGCGTACTTCTACACGACATTCTGCGGAAGATCAAGCGCTTGATCAAATAGCTAAGGAGGCAGAAGCAAGATTGGCTGCTAGGCGACAAGCAAGAGCAGAAGCCAGGGAAATACGAATGCGTGAATTAGAGAGACAACAGAAAGAGGCAGAAGAGAATGCCGATAGGGTTTATGACATATGCGCAGCTGATGTAAACAGAACTATGAGAGTAACTCCAGATCCAGTACGTACATCACGACTTCTTACAAATTCCAATAATTTCCAGTCAAGTCGTAGATCTTCAGAAGATTCGTTAGAAGATGCAGGATTAAGTAGAGATATTAGGatGGAATTAAAggaatttgaagaaaaattccGGAAGGCAATGATAGCTAATGCTCAgctagataatgaaaaatcatCTTATGCTTATCAAgttgatttattaaaagataaattagaAGAATTAGAGGAAACTACTGCGCAATTACGTAGAGaattgagagagaaaaatcgAGATGTTGAACAGTTAAAACGAGTTAGTCAAAGACTAAATGAAGATTTAGATATTTGCAGAGCACAGTTAGTAGAAAGAGATACACTTATACaagaaaacGGTTTAGTCATTGTTGACAATAAAGAAAGTGAAGATGAAGAcaacgaaaatattgaaaatggaTTATGTCATAAAAAGAGAGTACTAATCAGTACAGAAGCTGCAGAATTATTAGAGACGGCTGGTAAAGGCTCACTAGatattcgGTTGAGAAAGTTTGCTTCTGAAAAAAAGGATTTGCAAGATGAAATTCGCCACTTAAAATTGGAATTAGAAGAAACTAGGAATCGTATGAGACCCGAAAAATCTGGTTcaatattagGTTGTTTATCGGATAATGAAGATATTCAACGTGAAGCAAACAAATTGTTGgctgattataaatttaaattacaaaaagcgGAGCAAGATATGTCTACATTGCAGGCAACAGTAGCTAGATTAGAAAGTCAAGTAATTCGTTATAAATCAGCTGCAGAAGCATCTGAAAAGGCAGAAGATGAGctaaaagtagaaaaaagaaaGTTACAAAGAGAAgtaaGAGAAACACAAAGTCGTGTAGAGGAATTGGAGACAGCAAATTCTCATTTACAAAGGAGATTGGATAAACTTAAAAACGCTAAATCAGCTCTTTTAAAAGAGCTCTAA
- Protein Sequence
- MESAVAGRRRTSTRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDICAADVNRTMRVTPDPVRTSRLLTNSNNFQSSRRSSEDSLEDAGLSRDIRMELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEETTAQLRRELREKNRDVEQLKRVSQRLNEDLDICRAQLVERDTLIQENGLVIVDNKESEDEDNENIENGLCHKKRVLISTEAAELLETAGKGSLDIRLRKFASEKKDLQDEIRHLKLELEETRNRMRPEKSGSILGCLSDNEDIQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRETQSRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01266881;
- 80% Identity
- -