Cflo008425.1
Basic Information
- Insect
- Camponotus floridanus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_003227725.1
- Location
- NW:2317504-2328067[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.8e-115 4.5e-111 370.3 34.6 1 300 29 329 29 329 0.95 2 3 0.0036 43 2.7 3.6 122 171 329 378 327 382 0.91 3 3 0.039 4.6e+02 -0.7 6.3 195 238 361 403 341 404 0.52
Sequence Information
- Coding Sequence
- ATGGAATCGGCTATAACTGGGCGAAGGAGGACTGCCACACGGCATTCTGCGGAAGATCAAGCACTTGATCAAATAGCTAAAGAGGCAGAAGCAAGACTTGCTGCTAGGAGACAGGCAAGAGCGGAAGCCAGAGAAATACGAATGCGTGAATTAGAGAGACAACAAAAAGAGGCAGAGGAAAATGCCGATAGGGTTTATGATATGTGTACAgTTGATGTGAATAGAAGTATGAGAGTAACTCCAGATCCAGTACGTACATCACGGCTTCTTACAAATTCCAACAATTTCCAATCAAGTCGCAGATCTTCAGAAGATTCATTAGAAGATGCAGGATTAAGTAGAGATATTAGGctggaattaaaagaatttgaagaaaaattcaGAAAGGCAATGATAGCTAATGCTCAATTAGACAACGAAAAATCATCTTATGTCTATCAAgttgatttattaaaagataaattagaaGAATTAGAGGAAACAATTGTACAAGTACGTAGAGAACTGAGGGAAAAGAATCGAGATTTCGAACAATCAAAACGAGttaatcagaaattaaaagaagattTAGGTATTTGCAAGGCACAATTATTAGAAAGAGATACACTTATACAAGAGAATGGCTTAATTATCATTGACAATGAAGGAAGCGAAGATgaagataatgaaaatattgaaaataggTCATATTGTAAAAAGAGGGTACTAGTCAGTACAGAAGCTGCAGAATTATTGGAAACTGCTGGTAAAGGTTCTCTGGatgtCCGATTAAGAAAGTTTgcttttgaaaaaaaggaatTGCAAGATGAAATTCGACATTTGAGATTGGAACTGGAAGAAACTAGAAATCGCATGAGATCCGAGAGATCATCTGGTTCAGTATTAGCAGGTTGCTTGTCCGAAAACGAAGATATTCAGCGTGAGGCAAATAAATTGTTagcagattataaatttaaattacaaaaagcaGAACAAGATATGTCCACGCTACAAGCAACAGTAGCTAGATTGGAAAGTCAAGTAATTCGTTATAAATCAGCTGCAGAAGCATCTGAAAAAGCAGAAGATGAATTAAAagtggaaaaaagaaaattgcaaagaGAAgtaAGAGAAACACAAGCCCGTGTAGAAGAATTGGAGACAGCAAATTCTCATCTACAAAGGCGATTAGATAAacttaaaaatgcaaaatcgGCACTTTTAAAGGAACTTTGA
- Protein Sequence
- MESAITGRRRTATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCTVDVNRSMRVTPDPVRTSRLLTNSNNFQSSRRSSEDSLEDAGLSRDIRLELKEFEEKFRKAMIANAQLDNEKSSYVYQVDLLKDKLEELEETIVQVRRELREKNRDFEQSKRVNQKLKEDLGICKAQLLERDTLIQENGLIIIDNEGSEDEDNENIENRSYCKKRVLVSTEAAELLETAGKGSLDVRLRKFAFEKKELQDEIRHLRLELEETRNRMRSERSSGSVLAGCLSENEDIQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRETQARVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01266881;
- 80% Identity
- -