Osur004658.1
Basic Information
- Insect
- Oryzaephilus surinamensis
- Gene Symbol
- bab1
- Assembly
- GCA_004796505.1
- Location
- SSSI01002174.1:23179-35078[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-17 1.3e-14 53.6 0.0 1 43 73 116 73 118 0.95 2 2 4.5 2.3e+03 -1.6 1.3 6 15 202 211 200 215 0.87
Sequence Information
- Coding Sequence
- ATGATGTCAGAAGGCTTCTATACCACACGCACCATGTTGTTGccttttgCAAAATTGCTCGAATCCTCTCATGCTTGGTTGGGCGCATCTACCTCATCAATAGCCGcAGACAGCTACCAGTATCAGTTGCAGTCTATGTGGCAGAAATGTTGGAATACGAATCAAAGTCTTGTACATAATTTGCGCTTCCGTGAAAGAGGGCCCTTAAAATCGTGGCGACCTGAAACAATGGCCGAGGCAATTTTTTCCGTATTGAAAGAAGGCTTATCACTATCACAGGCAGCTAGAAAATACGATATTCCATATCCAACGTTCGTCTTATATGCCAATAGAGTACACAATATGTTAGGACCATCTGCAGATGGAGGATCAGaCTTACGACCGAAAGGTAGGGGAAGACCGCAAAGAATATTGTTAGGGGTTTGGCCTGATGAACATATACGGGGTGTAATACGAGCGGTAGTGTTTAGAGATTCACATCAAATTAAGGACGAGCCTCATTTATCTTACCCAAGATTGCATGACGGTGTAACAATTCAAAGTTACCCCAACAATTCGTGTAGTAATGGATCAGATCCGAACGTGTCACCTGGGGCGGCAGCTGCTGCAGCTGTTGCCGCAGTGGCACAAGGTTTAAGACAACAGATGTGTAGTATGGTTGCGGCAGCACACAATCAAAGTTCTGCACACGATACGAATCCTGTTGCTAGTTTAGTAAATTCCTTAGCATTAGCTGGCCATTGTGGTAATGTTTCAATGCCCAGCAATGGGGCACCACCAATGAGCATGAGTCATATAGCTTCCATGCGTTGTTTGAGCAGTCCTGCTGGCAGTATACAAGATTTAAGGATATCACCATCAGAATCAGCATTAGATAGTCCAATTTCATCGCCATTAGGTTTAACGGTATCCAGTACAATGGAACCAGCAATTAATATGAATATAGGTAATAGTATGGACGTGGGTATTGGCGTGTCCGGTATGACATATAAGCCGGCCAGATCGTTTACATCGCCACGGCCCGAGAATCTCTTCCAAGAAGATATTGATGATTTAGTCAAACCAATGCACACTTCCACACCACGTCCAAAAGATACTATGGCCTCAATAAAAATGGAACCATTAGCAGAATGTCGTGGCGAATGA
- Protein Sequence
- MMSEGFYTTRTMLLPFAKLLESSHAWLGASTSSIAADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGSDLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDSHQIKDEPHLSYPRLHDGVTIQSYPNNSCSNGSDPNVSPGAAAAAAVAAVAQGLRQQMCSMVAAAHNQSSAHDTNPVASLVNSLALAGHCGNVSMPSNGAPPMSMSHIASMRCLSSPAGSIQDLRISPSESALDSPISSPLGLTVSSTMEPAINMNIGNSMDVGIGVSGMTYKPARSFTSPRPENLFQEDIDDLVKPMHTSTPRPKDTMASIKMEPLAECRGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01344836; iTF_01215877; iTF_01163015; iTF_01307175; iTF_01121513; iTF_00376171; iTF_00413461; iTF_00443869; iTF_00429795; iTF_00920588; iTF_00845772; iTF_00807566; iTF_01287118; iTF_00830162; iTF_01186931; iTF_00387988; iTF_01240024; iTF_00195874; iTF_01238474; iTF_00423674; iTF_01535742; iTF_00244133; iTF_00752871; iTF_00414984; iTF_00870482; iTF_01277607; iTF_00735403; iTF_00910437; iTF_01105490; iTF_01329707; iTF_00929493; iTF_00813635; iTF_00841763; iTF_00987050; iTF_01366251; iTF_01022130; iTF_01409877; iTF_00465910; iTF_00464581; iTF_01441850; iTF_01257888; iTF_01283296; iTF_01107112; iTF_00431387; iTF_01128245; iTF_01241737; iTF_00278059; iTF_00792013; iTF_00436393; iTF_00387116; iTF_00369489; iTF_01126274; iTF_01058340; iTF_01371035; iTF_01096541; iTF_01196608; iTF_00049191; iTF_00048560; iTF_00083827; iTF_01400280; iTF_00330453; iTF_00739863; iTF_00136758; iTF_00626978; iTF_00956228; iTF_00433963; iTF_01252619; iTF_01123602; iTF_01120790; iTF_00626041; iTF_00740735; iTF_01097349; iTF_00980860; iTF_00137834; iTF_00169110; iTF_00629718; iTF_00631421; iTF_00721910; iTF_01368934; iTF_00165964; iTF_01310257; iTF_00885812; iTF_00755381; iTF_00327785; iTF_00329068; iTF_00458781; iTF_01295877; iTF_01047025; iTF_00056466; iTF_01289684; iTF_01014167; iTF_00110460; iTF_00025950; iTF_01311478; iTF_00391870; iTF_00392678;
- 90% Identity
- iTF_01310257;
- 80% Identity
- -