Hcic004926.1
Basic Information
- Insect
- Hycleus cichorii
- Gene Symbol
- bab1
- Assembly
- GCA_013841215.1
- Location
- JACDRQ010000005.1:229137-233114[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.6e-18 8.1e-15 53.8 0.0 1 43 49 92 49 94 0.95 2 2 1.3 1.4e+03 -1.4 1.4 6 15 178 187 176 199 0.88
Sequence Information
- Coding Sequence
- ATGAAAACTTATTATTTGCAATTTTATGTTACAGCAGACAGTTATCAGTATCAGTTGCAATCTATGTGGCAGAAATGTTGGAATACGAATCAAAGTCTGGTACACAATTTGCGCTTCCGTGAACGTGGCCCATTAAAATCATGGCGACCTGAGACGATGGCTGAAGCGATATTTTCAGTTTTGAAAGAGGGCCTATCATTGTCACAGGCAGCTAGGAAATACGATATTCCATATCCTACATTTGTTTTATATGCAAATCGTGTACATAATATGTTAGGCCCATCAGCGGACGGCGGTTCAGATTTACGACCGAAAGGCCGTGGTAGGCCGCAACGAATACTGTTGGGTGTATGGCCTGATGAGCATATAAGAGGTGTGATAAGGGCGGTAGTGTTTCGAGATTCACATCAAATCAAAGAAGAATCCCATCTTGCCTATCCACGATTGCATGATGGCGTTAGTATACACAGTTATCCGAATAACACTTGTAGTAATGGATCTGATCCGAATGTATCCCCTGGGGCGGCGGCCGCTGCCGCTGTGGCGGCTGTGGCACAAGGTTTACGTCAACAAATGTGCAGTATGGTGGCAGCGGCACAACATCAAAATTCATCGCACGATACAAATCCTGTAGCGAGTCTAGTGAATTCTTTAGCATTGGCCACACATTGTGGCTCAATGTCAAGTAATGGTGGGCCACCAATGACAATGTCATCGTCTTTACGTAGTATGAGTAGTCCGGCTGGTAGTATACAAGATTTACGAATCAGTCCAACTGAATCGGCATTAGAAAGTCCCATATCATCACCATTAGGTTTAACTGTATCGAGTACGATGGAACCAGCGATTAATATGAATATAGGTAATAGTATGGATGTTGGAATTGGTGGTATGACTTATAAGCCGACAAGAGCATTCACATCACCCCGGCCGGAGAATCTCTTCCAAGAAGACATCGATGAAATTGTTAAGCCGATGCACACTTCCACGACGCGCCCAAAGGACTCTATGGCCACTATTAAAATGGAACCGTTGGCAGAGTGTCGCGGTGAATGA
- Protein Sequence
- MKTYYLQFYVTADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGSDLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDSHQIKEESHLAYPRLHDGVSIHSYPNNTCSNGSDPNVSPGAAAAAAVAAVAQGLRQQMCSMVAAAQHQNSSHDTNPVASLVNSLALATHCGSMSSNGGPPMTMSSSLRSMSSPAGSIQDLRISPTESALESPISSPLGLTVSSTMEPAINMNIGNSMDVGIGGMTYKPTRAFTSPRPENLFQEDIDEIVKPMHTSTTRPKDSMATIKMEPLAECRGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01121512;
- 90% Identity
- iTF_01409877;
- 80% Identity
- -