Ipal008636.1
Basic Information
- Insect
- Iselma pallidipennis
- Gene Symbol
- bab1
- Assembly
- GCA_037464855.1
- Location
- JAZBHA010001008.1:5259-8857[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.4e-18 8.2e-15 53.9 0.0 1 43 28 71 28 73 0.95 2 2 0.79 1e+03 -0.8 0.8 6 15 157 166 155 172 0.87
Sequence Information
- Coding Sequence
- ATGTGGCAAAAATGTTGGAATACGAATCAAAGTCTCGTACATAATTTGCGCTTCCGTGAACGAGGTCCATTGAAATCGTGGCGACCTGAAACAATGGCTGAAGCGATCTTTTCAGTTCTTAAAGAAGGTCTATCATTATCACAAGCAGCTAGAAAATATGATATACCATATCCTACATTCGTCTTATATGCCAATCGTGTACATAATATGTTAGGACCATCAGCTGATGGTGGTTCAGatttaCGACCGAAAGGCCGAGGTAGGCCGCAACGTATTCTATTGGGTGTATGGCCTGATGAACATATAAGAGGTGTGATAAGGGCGGTAGTATTTCGAGATTCACATCAAATCAAAGAAGAGTCCCATCTAGCGTATCCACGATTGCATgaTGGCGTCAGTATACATAGTTATCCGAACAACACTTGCAGTAATGGATCTGATCCGAATGTATCCCCTGGGGCGGCAGCTGCTGCTGCTGTGGCAGCAGTGGCGCAAGGATTACGCCAACAAATGTGCAGTATGGTGGCGGCGGCTCAACATCAAAGTTCCGCTCACGATACAAATCCTGTAGCAAGTCTAGTGAATTCTCTCGCATTAGCCACACATTGTGGTACGATGTCAAGTAATGGTGGCCCACCAATGACAATGACATCATCTTTACGAAGTATGAGCAGTCCGGCCGGTAGTATACAAGATTTACGAATAAGTCCCACCGAATCGGCATTAGAAAGTCCCATATCATCACCATTAGGTTTAACTGTATCCAGTACAATGGAACCAGCAATCAATTTGAATATCGGTAGTAGTATGGATGTGGGTATTGGCGGTATGACATATAAACCATCGAGAGCATTCACATCACCACGACCGGAAAACCTCTTCCAGGAAGATATCGATGAATTAGTGAAGCCCATGCATCATACTTCCACCGCTCGTCCAAAGGACTCAATGGCCACCATTAAAATGGAACCGTTGACGGAGTGTCGCGGTGAATGA
- Protein Sequence
- MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGSDLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDSHQIKEESHLAYPRLHDGVSIHSYPNNTCSNGSDPNVSPGAAAAAAVAAVAQGLRQQMCSMVAAAQHQSSAHDTNPVASLVNSLALATHCGTMSSNGGPPMTMTSSLRSMSSPAGSIQDLRISPTESALESPISSPLGLTVSSTMEPAINLNIGSSMDVGIGGMTYKPSRAFTSPRPENLFQEDIDELVKPMHHTSTARPKDSMATIKMEPLTECRGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01121512;
- 90% Identity
- iTF_01409877;
- 80% Identity
- -