Dpon003183.1
Basic Information
- Insect
- Dendroctonus ponderosae
- Gene Symbol
- bab1
- Assembly
- GCA_000355655.1
- Location
- NW:787296-796002[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.3e-18 7.4e-15 53.6 0.0 1 43 74 117 74 119 0.95 2 2 0.76 1.3e+03 -1.6 1.3 6 15 203 212 201 216 0.87
Sequence Information
- Coding Sequence
- ATGCCGAGAAACCGCGCAAAACTTGAGGTTTTATTGATGATagggtttttttgtttttgggtgTTAATCACTGTTTGCTTCTTCTGTTTCAGGTATCGACTCCTACATGCAGACAGCTACCAGTACCAGTTGCAGTCGATGTGGCAGAAATGCTGGAACACCAATCAGAGCCTCGTGCACAATTTGAGGTTTCGCGAGCGCGGCCCGCTGAAGTCGTGGCGGCCCGAGACGATGGCCGAGGCGATTTTTTCCGTCCTGAAGGAGGGCCTCTCATTGTCGCAGGCGGCCAGAAAGTACGACATCCCGTATCCCACTTTCGTGCTGTACGCCAATCGGGTGCACAACATGTTGGGCCCGTCGGCCGACGGCGGATCTGATTTGCGACCGAAGGGCAGAGGGCGGCCGCAAAGGATCCTGCTGGGCGTGTGGCCGGACGAGCACATCAGGGGCGTGATCAGGGCGGTGGTGTTCCGCGACTCGCACCAGATCAAGGACGAGCCCCACATTCCCTATCCGAGACTGCATGACGGCGTCACCATCCAGAGCTACCAGAACAACAGCTGCAGCAACGGCGCCGATCCGAACGTGTCGCCGGGGGCAGCCGCAGCGGCCGCCGTGGCTGCAGTCGCGCAAGGGCTGCGCCAGCAAATGTGCAGCATGGTTGCCGCCGCCCACAACCAGAGCTCAGCGCACGATACAAATCCGGTGGCCAGTCTGGTCAACACGCTGGCGCTAGCGGGGCATTGCGGCAACGTGGCGCTGCCCAGCAACGGTGCGCCGCCAATGAGCATGAGCCACATGGCGAGCATGCGCAATATGAGCAGTCCCGCTGGTAGCATACAAGACCTGCGCATCAGCCCGGCCGAGTCCGCTGGCATGGAGAGTCCGATCTCGTCCCCTCTGGGTCTCACTGTTTCCAGCACGATGGAGCCCGCCATTAACATGAACATCGGCAACAACATGGACGTGGGCATTGGAGTGTCGGGCATGACCTACAAGCCGTCGAGGTCTTTTACGTCGCCGCGCCCCGAGAGCCTCTTTCAGGAGGACATTGAGGATCTGGTGAAGCCGATCCACGGCTCGAACACGCCCAGGCCGAAAGACACGATGCCCTCCATCAAGATGGAGCCGATGACGGAGTGCCGGGGCGACTGA
- Protein Sequence
- MPRNRAKLEVLLMIGFFCFWVLITVCFFCFRYRLLHADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGSDLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDSHQIKDEPHIPYPRLHDGVTIQSYQNNSCSNGADPNVSPGAAAAAAVAAVAQGLRQQMCSMVAAAHNQSSAHDTNPVASLVNTLALAGHCGNVALPSNGAPPMSMSHMASMRNMSSPAGSIQDLRISPAESAGMESPISSPLGLTVSSTMEPAINMNIGNNMDVGIGVSGMTYKPSRSFTSPRPESLFQEDIEDLVKPIHGSNTPRPKDTMPSIKMEPMTECRGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01121512;
- 90% Identity
- iTF_01310257;
- 80% Identity
- -