Agra002537.1
Basic Information
- Insect
- Aphodius granarius
- Gene Symbol
- bab1
- Assembly
- GCA_963971325.1
- Location
- OZ020221.1:5136059-5152358[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.6e-17 2.6e-14 53.5 0.0 1 43 101 144 101 146 0.95 2 2 5.3 3.9e+03 -1.5 1.1 6 15 229 238 227 243 0.87
Sequence Information
- Coding Sequence
- ATGTGGAGTTCATGCCTTCGTGGTTTCGTTCGACCGCGGTGGTACCATCCTCATGCGCTGGTAGTTGGAGAGAGAGCGATGGAGCGGAGCGAGAGAGACGGAGAGAGAAGCCTTGTTAAAAATACAACGGCCAAGTTATTGGAGTCATCCCATGCTTGGCTCGGTGCCGCCTCGACTAGTTCAATTGCCGCAGACAGCTACCAGTATCAGCTGCAATCCATGTGGCAGAAGTGCTGGAATACGAATCAGAGTCTGGTGCACAATCTGAGATTCCGCGAAAGGGGCCCGTTGAAATCGTGGAGGCCTGAAACAATGGCCGAGGCGATCTTCTCGGTGCTGAAGGAAGGATTGTCCCTGTCGCAGGCTGCAAGGAAATACGACATCCCGTATCCGACGTTTGTCCTCTATGCCAATCGAGTCCATAACATGCTTGGGCCGTCGGCCGATGGAGGTTCGGATCTGCGACCAAAAGGCAGAGGTCGTCCTCAGAGGATTCTCCTAGGCGTTTGGCCTGATGAGCACATACGAGGTGTCATTAGAGCAGTCGTTTTCCGGGATTCCCATCAAATAAAGGACGAACACATGGTGTACCCACGCATGCATGATGGTGTCAATATGCCGAATTACCCGAACAACAACTGCAGTAACGGAGCAGAATCCAACGTGTCTCCAGGAGCAGCAGCGGCCGCAGCAGTGGCTGCAGTTGCACAAGGTCTTCGGCAACAGATGTGCAGTATGGTTGCTGCTGCGCAGCATCAAAGTTCAGCGCACGACACCAACCCAGTAGCAAGTTTAGTCAACTCTTTAGCATTAGCGGGACATTGTGGAGGTGTCTCCATGTCGAGTAATGGAGCCCCACCGATAAGCATGAGCCATATGGCTTCGATGAGGATGGCCAGTCCGGCAAACAGCATACAAGATCTACGAATAAGTCCTGCAGGATCAGGTTTAGAAAGTCCGATATCTTCCCCGTTAGGTTTAACTGTTTCGAGTTCTATGGAGCCCTCTATAAGCATGGGTATCGGGAATAATCTGGATATCTCAGCGATGGGTGCACCTGCAATGTCCGGTTATAATAAACCGCCGAGGACGTTCGCATCCCCAAGGCCGGAGAATTTATTTCATGAGGAACTGGAGGAGTTAGTTAAGCCTTTGCACGGCACCAATGGGGGCCGCCCAAAGGACCCAATCTCATCGATAAAGATGGAACCGATGACAGAGTGTCGGGGCGAATGA
- Protein Sequence
- MWSSCLRGFVRPRWYHPHALVVGERAMERSERDGERSLVKNTTAKLLESSHAWLGAASTSSIAADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGSDLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDSHQIKDEHMVYPRMHDGVNMPNYPNNNCSNGAESNVSPGAAAAAAVAAVAQGLRQQMCSMVAAAQHQSSAHDTNPVASLVNSLALAGHCGGVSMSSNGAPPISMSHMASMRMASPANSIQDLRISPAGSGLESPISSPLGLTVSSSMEPSISMGIGNNLDISAMGAPAMSGYNKPPRTFASPRPENLFHEELEELVKPLHGTNGGRPKDPISSIKMEPMTECRGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01121512;
- 90% Identity
- iTF_00980860;
- 80% Identity
- -