Rfun024140.1
Basic Information
- Insect
- Rosalia funebris
- Gene Symbol
- bab1
- Assembly
- GCA_037954035.1
- Location
- JAZFAV010000015.1:5727819-5736512[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-16 3.8e-14 53.9 0.0 1 43 28 71 28 73 0.95
Sequence Information
- Coding Sequence
- ATGTGGCAGAAATGCTGGAATACGAATCAAAGTCTCGTTCATAACTTGCGCTTCCGCGAAAGAGGACCGCTGAAATCCTGGAGACCTGAAACTATGGCCGAGGCGATATTCTCAGTTCTCAAGGAAGGGCTGTCCTTGTCCCAGGCcgcaagaaaatacgatattccATACCCGACTTTCGTACTATACGCTAATCGAGTGCACAACATGTTAGGACCTTCCGCCGATGGTGGATCGGATTTACGACCAAAAGGAAGAGGTAGACCTCAAAGAATACTGCTGGGCGTATGGCCAGATGAACACATAAGAGGAGTAATTAGAGCAGTAGTTTTCCGAGATTCGCATCAAATTAAAGAAGAGTCACACTTGTCCACCTATCCCAGATTACACGATGGTGTAACAATTCAAAGCTACCAGAATCAAAATTCGTGTAGTAATGGATCGGATCCTAACAACGTATCTCCCGGAGCTGCAGCTGCAGCTGCTGTGGCTGCTGTTGCCCAAGGCCTAAGACAGCAGATGTGCAGCATGGTGGCTGCAGCACACAACCAAAGCACAGCACATGACACTAATCCTGTGGCCAGCTTGGTGAATTCTCTGGCTCTAGCTGGTCATTGCGGAAGTATGACAATGCCCAGTAATGGAGCTCCTCCCATGAGTATGAGCCATATAGCTTCCATGCGTAGTATAAGTAGTCCTGCAGGGAGTATACAGGACTTACGGATAAGTCCTGCAGAGTCTGCCCTTGACAGTCCCATATCTTCTCCATTAGGTTTAACAGTTTCCAGTTCCATGGAACCAGCAATCAATATGAACATTGGAAACAACATGGATGTAGGGATTGGGGTGTCTGGCATGACATATAAGCCTGCCCGGCCATTCACTTCACCTAGGCCTGAAAATCTCTTCCAAGAAGACATTGACGATTTAGTCAAGCCAATGCATTCTTCCACCCCACGTCCAAAAGACACTATGGCAACCATTAAAATGGAACCATTAGCAGAATGTCGTGGCGAATGA
- Protein Sequence
- MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGSDLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDSHQIKEESHLSTYPRLHDGVTIQSYQNQNSCSNGSDPNNVSPGAAAAAAVAAVAQGLRQQMCSMVAAAHNQSTAHDTNPVASLVNSLALAGHCGSMTMPSNGAPPMSMSHIASMRSISSPAGSIQDLRISPAESALDSPISSPLGLTVSSSMEPAINMNIGNNMDVGIGVSGMTYKPARPFTSPRPENLFQEDIDDLVKPMHSSTPRPKDTMATIKMEPLAECRGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01121512;
- 90% Identity
- iTF_01368934; iTF_00165964; iTF_00329068; iTF_00327785; iTF_01047025; iTF_00735403; iTF_00910437; iTF_00436393; iTF_01105490; iTF_00387116; iTF_00792013; iTF_00056466; iTF_01186931; iTF_01121512; iTF_01344836; iTF_01307175; iTF_01121513; iTF_00413461; iTF_00443869; iTF_00387988; iTF_00755381; iTF_00721910; iTF_01295877; iTF_00885812; iTF_01014167; iTF_01289684; iTF_00431387; iTF_01215877; iTF_01163015; iTF_01107112; iTF_01241737; iTF_00376171; iTF_00845772; iTF_00830162; iTF_01240024; iTF_00195874; iTF_01238474; iTF_00110460; iTF_00458781; iTF_00025950; iTF_00391870; iTF_00392678;
- 80% Identity
- -