Osur004659.1
Basic Information
- Insect
- Oryzaephilus surinamensis
- Gene Symbol
- bab1_3
- Assembly
- GCA_004796505.1
- Location
- SSSI01002174.1:23179-35078[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-17 1.3e-14 53.6 0.0 1 43 72 115 72 117 0.95 2 2 4.5 2.3e+03 -1.6 1.3 6 15 201 210 199 214 0.87
Sequence Information
- Coding Sequence
- ATGATGTCAGAAGGCTTCTATACCACACGCACCATGTTGTTGccttttgCAAAATTGCTCGAATCCTCTCATGCTTGGTTGGGCGCATCTACCTCATCAATAGCCGACAGCTACCAGTATCAGTTGCAGTCTATGTGGCAGAAATGTTGGAATACGAATCAAAGTCTTGTACATAATTTGCGCTTCCGTGAAAGAGGGCCCTTAAAATCGTGGCGACCTGAAACAATGGCCGAGGCAATTTTTTCCGTATTGAAAGAAGGCTTATCACTATCACAGGCAGCTAGAAAATACGATATTCCATATCCAACGTTCGTCTTATATGCCAATAGAGTACACAATATGTTAGGACCATCTGCAGATGGAGGATCAGaCTTACGACCGAAAGGTAGGGGAAGACCGCAAAGAATATTGTTAGGGGTTTGGCCTGATGAACATATACGGGGTGTAATACGAGCGGTAGTGTTTAGAGATTCACATCAAATTAAGGACGAGCCTCATTTATCTTACCCAAGATTGCATGACGGTGTAACAATTCAAAGTTACCCCAACAATTCGTGTAGTAATGGATCAGATCCGAACGTGTCACCTGGGGCGGCAGCTGCTGCAGCTGTTGCCGCAGTGGCACAAGGTTTAAGACAACAGATGTGTAGTATGGTTGCGGCAGCACACAATCAAAGTTCTGCACACGATACGAATCCTGTTGCTAGTTTAGTAAATTCCTTAGCATTAGCTGGCCATTGTGGTAATGTTTCAATGCCCAGCAATGGGGCACCACCAATGAGCATGAGTCATATAGCTTCCATGCGTTGTTTGAGCAGTCCTGCTGGCAGTATACAAGATTTAAGGATATCACCATCAGAATCAGCATTAGATAGTCCAATTTCATCGCCATTAGGTTTAACGGTATCCAGTACAATGGAACCAGCAATTAATATGAATATAGGTAATAGTATGGACGTGGGTATTGGCGTGTCCGGTATGACATATAAGCCGGCCAGATCGTTTACATCGCCACGGCCCGAGAATCTCTTCCAAGAAGATATTGATGATTTAGTCAAACCAATGCACACTTCCACACCACGTCCAAAAGATACTATGGCCTCAATAAAAATGGAACCATTAGCAGAATGTCGTGGCGAATGA
- Protein Sequence
- MMSEGFYTTRTMLLPFAKLLESSHAWLGASTSSIADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGSDLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDSHQIKDEPHLSYPRLHDGVTIQSYPNNSCSNGSDPNVSPGAAAAAAVAAVAQGLRQQMCSMVAAAHNQSSAHDTNPVASLVNSLALAGHCGNVSMPSNGAPPMSMSHIASMRCLSSPAGSIQDLRISPSESALDSPISSPLGLTVSSTMEPAINMNIGNSMDVGIGVSGMTYKPARSFTSPRPENLFQEDIDDLVKPMHTSTPRPKDTMASIKMEPLAECRGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01121512;
- 90% Identity
- iTF_01310257;
- 80% Identity
- -