Obor000397.1
Basic Information
- Insect
- Oryctes borbonicus
- Gene Symbol
- bab1_2
- Assembly
- GCA_902654985.1
- Location
- LR736865.1:6481669-6567985[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.5e-18 1.1e-14 53.9 0.0 1 43 28 71 28 73 0.95 2 2 0.8 1.3e+03 -0.8 0.8 6 15 156 165 154 171 0.87
Sequence Information
- Coding Sequence
- ATGTGGCAGAAATGCTGGAACACGAACCAGAGCCTCGTCCACAACTTGCGCTTCCGCGAAAGGGGTCCGTTGAAGTCGTGGCGGCCGGAGACCATGGCCGAGGCCATCTTCTCCGTCCTGAAAGAGGGACTCTCGTTATCGCAGGCGGCCCGCAAATACGACATCCCGTATCCGACGTTTGTACTCTACGCCAACAGGGTGCACAACATGCTCGGCCCATCAGCTGACGGAGGTTCGGACTTACGACCTAAAGGAAGAGGAAGACCACAAAGGATTTTACTGGGCGTATGGCCTGACGAACATATAAGAGGAGTTATTAGAGCTGTCGTATTTAGGGATTCTCATCAGATTAAGGAAGAGCCGCTAGTTTATCCACGTATGCatGATGGTGTAACAATTCAAAGCTACCCAAATAACAACTGTAGCAACGGATCTGAACCCAACGTTTCGCCAGGAGCGGCGGCAGCGGCCGCAGTAGCCGCAGTAGCCCAAGGATTAAGACAGCAAATGTGCAGTATGGTCGCGGCAGCCCAACATCAGAGTTCCGCGCATGACACCAACCCAGTCGCCAGTTTAGTGAACTCCTTAGCATTAGCCGGACATTGCGGCGGCGTTTCGATGTCCAGCAACGGTGCCCCGCCCATCAGCATGAGCCATATGACGTCAATGCGCATGGCCAGCCCGGCCGGCAGCATACAAGATCTGAGGATAAGTCCGGCCGGTTCTGGGCTGGAGAGTCCGATCTCTTCCCCGCTCGGTCTCACAGTGTCGAGTAGTATGGAGCCGCCGATAAGCATGGGCATGGGCAATAACATGGACGTGGGCATCGGCGTCTCGGGCATGACGTATAAGCCCTCGAGATCGTTCGCGTCGCCACGACCCGAAGCGCTTTTCCACGAGGACATCGAGGAGCTCGTGAAGCCGATTCACAATACTACCGTAAGACCGAAAGACCAAATATCTTCCATAAAAATGGAGCCAATGACCGAGTGTCGCGGGGAATGA
- Protein Sequence
- MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGSDLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDSHQIKEEPLVYPRMHDGVTIQSYPNNNCSNGSEPNVSPGAAAAAAVAAVAQGLRQQMCSMVAAAQHQSSAHDTNPVASLVNSLALAGHCGGVSMSSNGAPPISMSHMTSMRMASPAGSIQDLRISPAGSGLESPISSPLGLTVSSSMEPPISMGMGNNMDVGIGVSGMTYKPSRSFASPRPEALFHEDIEELVKPIHNTTVRPKDQISSIKMEPMTECRGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01121512;
- 90% Identity
- iTF_00465910;
- 80% Identity
- -