Spla003797.2
Basic Information
- Insect
- Salpingus planirostris
- Gene Symbol
- bab1
- Assembly
- GCA_949788335.1
- Location
- OX460918.1:10925965-10937827[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7e-18 1.4e-14 53.5 0.0 1 43 89 132 89 134 0.95 2 2 1 2e+03 -1.5 1.1 6 15 218 227 216 232 0.87
Sequence Information
- Coding Sequence
- ATGCGCTCCGCCGTTTGGGGGCTCGTCGACCCCGCAAACTTGGCGATAACCGCGCGCACGGTTTCCCTTTTCCGGAAAAACCTCTATTACGGAAAAGCCAAGTTATTGGAGTCTTCTCATGCTTGGCTCGGCGCCTCCACCTCCTCCATTGCCGCAGACAGCTACCAGTACCAGTTGCAGTCGATGTGGCAGAAATGTTGGAACACGAATCAGAGTCTCGTTCACAACTTGCGCTTCCGCGAGAGGGGTCCGCTGAAATCGTGGCGGCCCGAAACCATGGCTGAGGCAATATTCTCGGTACTCAAAGAGGGATTGTCCTTATCCCAGGCCGCCAGGAAATACGACATCCCCTATCCGACTTTCGTCCTGTACGCCAACAGGGTGCACAACATGCTCGGCCCTTCGGCCGACGGAGGTTCAGATTTGAGGCCGAAAGGGAGAGGCCGACCGCAGAGGATTCTGTTGGGCGTTTGGCCTGATGAGCACATTAGGGGCGTGATACGCGCCGTAGTCTTCAGGGATTCCCACCAAATCAAAGAGGAACCCCACCTCGCTTACCCCAGGATACACGACGGAGTCAGCATACACAGCTACCCGAACAACACGTGCAGCAACGGGGCCGACCCGAACGTGTCCCCGGGtgcggcggccgccgccgccgttgCCGCCGTCGCCCAGGGCCTGCGCCAGCAGATGTGCAGCATGGTGGCGGCCGCCCAGCACCAGAGTTCGGCCCACGACACGAACCCGGTCGCCAGCCTGGTCAACTCGCTCGCCCTCGCCGGCCACTGCGGCGGCGTCGTCTCCATGGCCAGCaacggcggtggcggcggaggcggaggcggcggggcCGTCCCCGTGTCCATGCCGCACGCCACCTCGATGCGCAGCATGGGCAGCCCTGCCGGCAGCATCCAGGACCTGCGGATAAGCCCGTCGGAATCGGCCCTGGAGAGCCCCATCTCGTCGCCGCTCGGGCTGACCGTCTCCGGCAGCATGGAGCCGGCCATCAATCTCAACATCGGCGGACAGATGGACGTCGGCCTGGGCGGCATGACCTACAAGCCGACCAGGGCGTTCGCCTCGCCGCGGCCCGAGAATCTGTTCCAGGAGGACATCGACGAGCTCGTCAAGCCTATGCACTCCTCCTCGGGCCGGTCCAAGGACTCGATGGCCACCATCAAGATGGAGCCGCTGGCCGAGTGTCGCGGCGAATGA
- Protein Sequence
- MRSAVWGLVDPANLAITARTVSLFRKNLYYGKAKLLESSHAWLGASTSSIAADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGSDLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDSHQIKEEPHLAYPRIHDGVSIHSYPNNTCSNGADPNVSPGAAAAAAVAAVAQGLRQQMCSMVAAAQHQSSAHDTNPVASLVNSLALAGHCGGVVSMASNGGGGGGGGGGAVPVSMPHATSMRSMGSPAGSIQDLRISPSESALESPISSPLGLTVSGSMEPAINLNIGGQMDVGLGGMTYKPTRAFASPRPENLFQEDIDELVKPMHSSSGRSKDSMATIKMEPLAECRGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01121512;
- 90% Identity
- iTF_01409877;
- 80% Identity
- -