Avir000928.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- bab1
- Assembly
- None
- Location
- GWHAMMQ00000011:866776-873411[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3e-17 1.1e-14 53.9 0.0 1 43 28 71 28 73 0.95 2 2 6 1.9e+03 -1.4 1.3 6 15 159 168 157 172 0.87
Sequence Information
- Coding Sequence
- ATGTGGCAAAAATGCTGGAATACAAATCAAAGTCTTGTACACAACCTGCGCTTCCGTGAAAGAGGACCACTAAAATCGTGGCGACCAGAAACTATGGCCGAAGCGATATTTTCAGTTTTAAAGGAAGGACTGTCACTCTCACAAGCAGCTAGAAAATACGACATACCCTATCCTACTTTTGTCCTCTATGCTAATAGAGTCCATAATATGTTAGGACCTTCTGCTGATGGAGGATCAGATTTACGACCAAAAGGTAGAGGACGACCGCAAAGAATATTATTAGGAGTTTGGCCAGATGAACACATACGAGGAGTGATTCGAGCAGTTGTTTTTAGAGATTCACATCAAATAAAAGAAGAACCGCATATGACTACATATCCTAGATTACATGACGGAATCACAATTACAAACTACCAAAATCAGAATTCATGCAGCAACGGTTCCGACCCGAATGTTTCACCTGGAGCAGCAGCGGCTGCAGCTGTTGCAGCTGTAGCTCAAGGTTTGAGACAACAAATGTGTAGCATGGTAGCTGCAGCGCATAACCAGAGTACAGCTCATGACACTAACCCAGTGGCAAGTCTCGTAAATTCCCTTGCATTCGCTGGCCATTGTGGTAGTATGTCTATGCCTCCTAGTAATGGAGCTCCACCAATGAGTTTAAGTCATATAGCATCAATGAGGAACATGAGTAGTCCTGCTGGAAGTATCCAGGATTTAAGGATAAGCCCCGCAGAATCAGCTTTGGATAGTCCGATAGCTTCACCGTTAGGTTTGACGGTATCCAGTTCAATGGAACCGTCGATTAATATGAATATAGGGAATAATATGGATGTTGGTATAGGTGTGTCAGGAATGACATATAAACCATCAAGGGCGTTCACGTCGCCCAGACCTGAGAATCTCTTCCAAGAAGATATTGACGACTTGGTCAAGCCAATGCATGCTTCCTCAGCCCACCAAAAGGACACAATGGCAACAATTAAAATGGAACCTTTAGCAGAATGTCGTGGCGAATGA
- Protein Sequence
- MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGSDLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDSHQIKEEPHMTTYPRLHDGITITNYQNQNSCSNGSDPNVSPGAAAAAAVAAVAQGLRQQMCSMVAAAHNQSTAHDTNPVASLVNSLAFAGHCGSMSMPPSNGAPPMSLSHIASMRNMSSPAGSIQDLRISPAESALDSPIASPLGLTVSSSMEPSINMNIGNNMDVGIGVSGMTYKPSRAFTSPRPENLFQEDIDDLVKPMHASSAHQKDTMATIKMEPLAECRGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01121512;
- 90% Identity
- iTF_01310257;
- 80% Identity
- -