Gcor003906.1
Basic Information
- Insect
- Gnatocerus cornutus
- Gene Symbol
- bab1
- Assembly
- GCA_029298725.1
- Location
- CM055510.1:14859492-14871835[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-17 1.7e-14 53.6 0.0 1 43 80 123 80 125 0.95 2 2 2.1 2.5e+03 -1.4 1.1 6 15 209 218 207 223 0.87
Sequence Information
- Coding Sequence
- ATGTGTACCGAGTTTTTCTCCGCGACTGTCATCTCTATTTTCGGTCTAGCAAGAAACGGGAACATGCAGGCCAAGTTACTGGAGTCTTCCCATGCTTGGCTCGGTGCCTCCACGTCTTCTATAGCCGCAGACAGCTACCAGTACCAGTTGCAATCTATGTGGCAAAAATGTTGGAATACGAATCAAAGTCTTGTTCACAATTTGCGCTTCCGTGAAAGAGGGCCTCTGAAATCTTGGCGACCCGAAACTATGGCCGAAGCAATATTCTCGGTACTCAAAGAAGGATTGTCGTTGTCACAAGCCGCCAGGAAATACGATATTCCTTATCCTACGTTCGTTCTTTACGCCAATCGAGTACACAATATGTTGGGACCTTCGGCCGACGGAGGATCAGATTTACGGCCAAAGGGTAGAGGTCGACCTCAAAGGATTCTCTTAGGAGTTTGGCCAGATGAGCACATACGAGGTGTTATTCGAGCTGTAGTGTTCAGAGATTCGCATCAAATCAAAGAAGAACCTCATATTGGATATCCACGAATACATGATGGCGTCAGCATACACAGCTACCCTAACAATTCTTGTAGTAACGGTTCGGACCCCAACGTGTCTCCTGGTGCGGCGGCAGCAGCCGCCGTCGCGGCCGTCGCCCAAGGTCTCCGCCAACAAATGTGCAGTATGGTGGCGGCGGCGCAACACCAAAGCTCCGCACATGACACAAATCCAGTGGCGAGTCTGGTAAACTCCCTCGCATTAGCCGGTCATTGCGGCAACGTGTCCATGTCCAGCAACGGCGCCGCCGCACCCATAAGCATGACCCACGTGAGTTCGATGCGCAGCATGAGTAGTCCCGCCGGCAGCATACAAGATTTACGGATAAGTCCAGCGGAATCGGCGTTGGAGAGTCCCATTTCGTCGCCGTTGGGACTGACCGTGTCCAGTTCTATGGAGCCGGCGATCAACATGAACATCGGCAATAACATGGACGTCGGCATCTCGGGAATGACGTACAAGCCGACGAGGACGTTCACGTCACCTAGACCGGAAAATCTCTTCCAAGAAGATATTGACGAATTGGTTAAACCGATGCATGCTTCCACTCCACGTCCTAAAGACTCTATGGCTACGATTAAGATGGAGCCGATGGCAGAGTGTCGTGGCGAATGA
- Protein Sequence
- MCTEFFSATVISIFGLARNGNMQAKLLESSHAWLGASTSSIAADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGSDLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDSHQIKEEPHIGYPRIHDGVSIHSYPNNSCSNGSDPNVSPGAAAAAAVAAVAQGLRQQMCSMVAAAQHQSSAHDTNPVASLVNSLALAGHCGNVSMSSNGAAAPISMTHVSSMRSMSSPAGSIQDLRISPAESALESPISSPLGLTVSSSMEPAINMNIGNNMDVGISGMTYKPTRTFTSPRPENLFQEDIDELVKPMHASTPRPKDSMATIKMEPMAECRGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01121512;
- 90% Identity
- iTF_01409877;
- 80% Identity
- -