Ltri006851.1
Basic Information
- Insect
- Lydus trimaculatus
- Gene Symbol
- bab1
- Assembly
- GCA_037414755.1
- Location
- JAZBGY010001066.1:1588-15236[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.9e-18 1e-14 53.6 0.0 1 43 80 123 80 125 0.95 2 2 0.94 1.2e+03 -1.0 0.8 6 15 209 218 207 224 0.87
Sequence Information
- Coding Sequence
- ATGCCTTCTATTTCTTCACCTGTTTTCTCTATTAGTAGATCTGTTTGTGTTGTCGGTGATTTCAATGCTGCCAAGTTATTGGAGTCATCTCATGCTTGGCTCGGCGCCTCTACGTCTTCAATAGCCGCAGACAGTTATCAATATCAGTTGCAATCTATGTGGCAAAAATGTTGGAATACAAATCAAAGTTTAGTACATAATTTGCGCTTCCGTGAACGTGGCCCATTGAAATCATGGCGACCTGAAACAATGGCCGAAGCGATATTTTCAGTTCTTAAAGAAGGTCTATCATTATCACAAGCAGCTAGAAAATATGATATACCATATCcaacatttgttttatatgcAAATCGTGTACATAATATGTTAGGACCATCAGCGGACGGCGGTTCAGatttaCGACCGAAAGGCCGTGGTAGGCCGCAACGAATACTGTTGGGTGTATGGCCTGATGAACATATAAGAGGTGTGATAAGGGCGGTAGTGTTTCGAGATTCACATCAAATCAAAGAAGAATCCCATCTTGCCTATCCACGATTGCATGATGGCGTTAGTATACATAGTTATCCGAATAACACTTGTAGTAATGGTTCTGATCCGAATGTGTCCCCTGGGGCGGCTGCCGCGGCTGCTGTAGCGGCTGTAGCTCAAGGATTACGTCAACAGATGTGCAGTATGGTGGCGGCGGCACAACATCAAAATTCAGCACATGATACAAATCCTGTAGCAAATCTAGTGAATTCACTAGCATTAGCCACACATTGTGGCTCAATGTCGAGTAATGGTGGACCACCAATGACAATGGCATCATCTTTACGTAGTATGAGTAGTCCAGCGGGTAGTATACAAGATTTACGAATAAGTCCAACTGAATCGGCATTAGAAAGTCCCATATCATCACCATTAGGTTTAACTGTATCAAGTACAATGGAACCAGCGATTAATATGAATATTGGTAATAGTATGGATGTTGGTATTGGTGGTATGACGTATAAACCATCAAGAGCATTTACATCACCCCGACCAGAGAATCTCTTCCAAGAAGACATCGATGAAATTGTGAAACCGATGCATCACACTTCCACGACTCGTCCTAAGGATGCAATGGCCACAATTAAAATGGAACCGTTGGCAGAGTGTCGCGGTGAATGA
- Protein Sequence
- MPSISSPVFSISRSVCVVGDFNAAKLLESSHAWLGASTSSIAADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGSDLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDSHQIKEESHLAYPRLHDGVSIHSYPNNTCSNGSDPNVSPGAAAAAAVAAVAQGLRQQMCSMVAAAQHQNSAHDTNPVANLVNSLALATHCGSMSSNGGPPMTMASSLRSMSSPAGSIQDLRISPTESALESPISSPLGLTVSSTMEPAINMNIGNSMDVGIGGMTYKPSRAFTSPRPENLFQEDIDEIVKPMHHTSTTRPKDAMATIKMEPLAECRGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01121512;
- 90% Identity
- iTF_01409877;
- 80% Identity
- -