Caur007307.2
Basic Information
- Insect
- Crepidodera aurea
- Gene Symbol
- bab1
- Assembly
- GCA_949320105.2
- Location
- OX439472.1:90471276-90474910[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.1e-17 2.8e-14 53.7 0.0 1 43 62 105 62 107 0.95 2 2 9.1 4.9e+03 -1.5 1.3 6 15 193 202 191 206 0.87
Sequence Information
- Coding Sequence
- ATGACTAAAGGAGTTCACCTGCGGTTATTTAGGAAGTTATATAGCGGTTTCCATAACGTTTCTGTTCCTTGTGCAGATAGTTACCAATACCAGTTGCAATCGATGTGGCAAAAATGCTGGAACACAAATCAAAGTCTTGTACACAACTTGCGCTTCCGGGAAAGGGGACCACTGAAGTCGTGGAGACCAGAAACAATGGCGGAGGCGATATTTTCAGTACTGAAAGAAGGATTGTCCCTATCCCAAGCCGCCAGGAAATACGATATTCCTTATCCCACATTCGTGTTATACGCCAATAGGGTCCATAATATGTTGGGACCTTCTGCAGATGGTGGTTCAGATTTACGGCCAAAAGGAAGAGGACGACCCCAGAGAATATTATTAGGAGTATGGCCGGATGAACATATACGAGGTGTTATAAGGGCCGTTGTATTTAGAGATTCGCATCAAATCAAAGAAGAACCGCACATGACTACATATCCGAGACTACACgACGGAGTAACAGTTTCCAGCTACCAAAACCAAAATTCGTGCAGTAACGGCTCCGATCCCAACGTATCACCCGGCGCAGCAGCGGCTGCAGCTGTAGCTGCCGTAGCGCAGGGTCTTAGACAACAAATGTGCAGCATGGTAGCTGCAGCGCACAACCAAAGCACAGCACACGACACGAATCCTGTGGCAAGTCTGGTTAATTCCCTAGCTTTGGCAGGTCACTGTGGAAGCATGTCCATACCTCCTAGTAACGGGGCACCGCCGATGagTTTGAGCCATATAGTATCAATGCGTAACATGAGCAGTCCGGCAGGAAGCATCCAAGATTTGAGGATAAGTCCCGCAGAATCTGCAATGGAGAGTCCGATATCCTCACCACTTGGATTGACGGTTTCTAGTTCAATGGAGCCTTCGATCAATATGCACATAGGAAATAATATGGACGTTGGCATAGGTGTGTCAGGGATGACGTATAAGCCATCGAGGGCGTTCACGTCGCCCAGACCCGAGAATCTCTTCCAAGAAGACATAGACGACTTGGTCAAGCCAATGCATTCTTCCACTTCGCACCCAAAAGACACTATGGCGACTATCAAAATGGAACCCTTAGCAGAATGTCGAGGCGAATGA
- Protein Sequence
- MTKGVHLRLFRKLYSGFHNVSVPCADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGSDLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDSHQIKEEPHMTTYPRLHDGVTVSSYQNQNSCSNGSDPNVSPGAAAAAAVAAVAQGLRQQMCSMVAAAHNQSTAHDTNPVASLVNSLALAGHCGSMSIPPSNGAPPMSLSHIVSMRNMSSPAGSIQDLRISPAESAMESPISSPLGLTVSSSMEPSINMHIGNNMDVGIGVSGMTYKPSRAFTSPRPENLFQEDIDDLVKPMHSSTSHPKDTMATIKMEPLAECRGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01121512;
- 90% Identity
- iTF_01310257;
- 80% Identity
- -