Eden019496.3
Basic Information
- Insect
- Earota dentata
- Gene Symbol
- bab1
- Assembly
- GCA_027574905.2
- Location
- JAODGB020043843.1:1705178-1713322[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-17 1.6e-14 53.5 0.0 1 43 90 133 90 135 0.95 2 2 2 3.1e+03 -1.8 1.3 6 15 221 230 219 243 0.86
Sequence Information
- Coding Sequence
- ATGAATAACGTGAGAGCGCGCTCGCAGCCAGAGATCAAgacctcaaacctcaaacccGGGGGCCGCGGCGGGACCCAGAACGACGTCGCCGCCGGATCGgcTAAACTATTGGAATCTTCGCACGCATGGCTCGGTGCATCCACCTCATCGATCGCCGcaGACAGCTATCAGTACCAGCTGCAGTCCATGTGGCAGAAGTGCTGGAACACCAACCAGAGCCTCGTACACAACCTGCGCTTCCGCGAACGTGGCCCACTAAAGTCCTGGCGGCCGGAGACGATGGCTGAGGCGATCTTCTCGGTGCTGAAGGAGGGCTTGTCCCTGTCGCAAGCGGCGCGGAAATATGATATACCCTATCCGACGTTTGTGCTATATGCGAATCGCGTGCACAATATGTTAGGTCCGTCTGCCGATGGAGGTTCGGcAGATTTAAGACCCAAGGGACGGGGCCGGCCACAGAGGATCCTGCTGGGCGTCTGGCCCGACGAGCACATTCGCGGCGTGATCAGAGCTGTGGTTTTCAGAGATTCGCATCAGATCAAAGAGGAACCGCACATTGCTTATCCACGCATTCACGACAGCGTCAATAGCGTACAAAACTATCCCAATAACAACTGCAGCAACGGATCCGATCCGAATGTGTCTCCAggagcagccgccgccgccgcggtggCAGCCGTCGCGCACGGCCTCCGACAACAAATGTGCAGCATGGTAGCAGCCGCACAACACGCCAGCACGGCGCACGACACGAACCCGGTGGCCAGCTTGGTGAAttcgctcgcgctcgccggccaTTGTGGCTCCGTTTCTCTGCCCAGCAATGGCATCCCGCCGATGAGCATCAATCAGATGACATCGATGAGCCATATGACCTCCATGCGCATGGCTTCGCCCGCCGGCAGCATTCAGGACCTGCGAATCAGCCCGGCCGGCTCCGGCCTCGAGAGCCCCATCGCGTCCCCGCTGGGCCTCACCGTCTCGAGCAGCATGGACACCGCGCTCAACCTCGGCATGGCCAACAACATGGAGGTCGGCATCGGCTCTGGAATGACGTACAAGCCGAATCGCTCCAACTTCACGTCGCCCCGACCAGAGAATCTCTTCCAGGAGGACATCGACGAGCTGGTGAAGCCGATTCACGCAAACACGCCGTCGCGCCCCAAAGACGCTATGGCTTCCATCAAAATGGAACCGATGACGGAATGTCGAGGCGAATGA
- Protein Sequence
- MNNVRARSQPEIKTSNLKPGGRGGTQNDVAAGSAKLLESSHAWLGASTSSIAADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGSADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDSHQIKEEPHIAYPRIHDSVNSVQNYPNNNCSNGSDPNVSPGAAAAAAVAAVAHGLRQQMCSMVAAAQHASTAHDTNPVASLVNSLALAGHCGSVSLPSNGIPPMSINQMTSMSHMTSMRMASPAGSIQDLRISPAGSGLESPIASPLGLTVSSSMDTALNLGMANNMEVGIGSGMTYKPNRSNFTSPRPENLFQEDIDELVKPIHANTPSRPKDAMASIKMEPMTECRGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01121512;
- 90% Identity
- iTF_00429795;
- 80% Identity
- -