Cven011487.1
Basic Information
- Insect
- Coproporus ventriculus
- Gene Symbol
- bab1
- Assembly
- GCA_027574865.2
- Location
- JAODAH020027626.1:7878-16648[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.6e-18 1.6e-14 53.7 0.0 1 43 58 101 58 103 0.95 2 2 1.4 3e+03 -1.6 1.2 6 15 187 196 185 210 0.82
Sequence Information
- Coding Sequence
- ATGgCTAAACTATTAGAATCATCACATGCTTGGCTCGGTGCTTCAACCTCGTCAATAGCCGcAGATAGTTATCAATATCAACTGCAGTCGATGTGGCAAAAATGTTGGAATACGAATCAAAGCCTCGTCCATAATTTACGCTTCCGTGAAAGGGGTCCTTTAAAATCTTGGAGGCCGGAAACGATGGCCGAAGCAATTTTCTCAGTTTTGAAGGAAGGATTGTCATTGTCACAAGCAGCTAGGAAATACGATATACCATACCCCACCTTCGTTCTTTATGCTAATCGAGTGCACAATATGCTGGGTCCTTCGGCTGATGGAGGTTCGGATTTACGGCCTAAAGGCAGAGGAAGGCCCCAAAGAATATTATTAGGTGTATGGCCAGATGAACATATTCGAGGAGTAATCAGAGCAGTTGTATTTAGAGATTCTcatcaaattaaagaagaacCTCATATTGGTTATCCTAGAATACATGATGGTGTGTCTgtacaaaattatcaaaacaattcCTGTAGTAACGGTTCTGATCATAATGTATCTCCTGGAGCAGCAGCAGCGGCTGCAGTTGCTGCTGTTGCACATGGTTTACGACAACAAATGTGCAGTATGGTAGCAGCAGCGCAGCATGCAAGTACAGCTCATGATACAAACCCTGTGGCAAGTTTAGTTAATTCATTAGCGTTAGCTGGACATTGTGGATCAGTAACAATGCCCACGAATGGCGTCCCACCTATGAGTATAAACCAAATGACATCTATGAGCCATATGACATCAATGCGAATGGCGAGTCCTGCAGGAAGTATACAAGACCTTAGGATAAGTCCCGCAGGATCAGCCCTCGAAAGTCCAATATCATCACCTTTAGGTTTAACAGTGTCAAGTACAATGGATAGTGCATTAAATTTGGGTATGGGAAATAATATGGATGTAGGTATTGGTGTTTCGGGAATGACTTATAAACCTGCACGGTCATCGTTTACATCCCCCCGACCAGAGAATCTCTTCCAAGAGGATATCGATGAATTGGTGAAACCAATTCATACGACCGCTCCTCGTCCTAAAGACTCTATGGCTTCCATTAAAATGGAACCAATGACGGAATGTCGAGGCGAATGA
- Protein Sequence
- MAKLLESSHAWLGASTSSIAADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGSDLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDSHQIKEEPHIGYPRIHDGVSVQNYQNNSCSNGSDHNVSPGAAAAAAVAAVAHGLRQQMCSMVAAAQHASTAHDTNPVASLVNSLALAGHCGSVTMPTNGVPPMSINQMTSMSHMTSMRMASPAGSIQDLRISPAGSALESPISSPLGLTVSSTMDSALNLGMGNNMDVGIGVSGMTYKPARSSFTSPRPENLFQEDIDELVKPIHTTAPRPKDSMASIKMEPMTECRGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01121512;
- 90% Identity
- iTF_00429795;
- 80% Identity
- -