Cvic031040.1
Basic Information
- Insect
- Calliphora vicina
- Gene Symbol
- -
- Assembly
- GCA_958450345.1
- Location
- OY288236.1:97934461-97946558[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.3e-11 1.4e-07 32.0 0.0 1 38 563 601 563 606 0.89 2 4 1.6e-13 4.5e-10 40.0 0.0 2 39 618 655 617 658 0.94 3 4 1.9e-17 5.3e-14 52.6 0.0 1 45 672 717 672 717 0.98 4 4 5.9e-19 1.6e-15 57.5 0.0 1 43 724 767 724 769 0.96
Sequence Information
- Coding Sequence
- ATGAAGAATCCGTTTGCTTCTTATTATGACAATGAGGACAACGGCGAGTATATGCCAGAGATAAGACGAGGTCTTTTACGCACCGCTGAACAGTTAAAAATCAAAGGTCTTTGTGAGACAGCAGAAAATGCCGATGATCTGAATGATACGGCCACAGCAACAATAACAGTATCAGAGAATATACAGCAAGCGGTCGTTGGTAATATTGTCAATGCCACAGTAGTGCCGGGTCAGCAGTCTCCTCCTATACCCCACCAACAACATCAgccacaacaacagcagcagcaacaacaacagcagcagcatcaacaccaacagcagcagcagcaacaacaacaattaacaACTACCGCCGTATTAAGTCCGGGAAGTGCTCAACAGTTAGCAGCTACAGGACAATTGGTAACATCAACACCTGCCACAACACcccagcaacagcagcaacaacaacgaaaaTCCAGAGTCCGCAAACGTTCAAAATCCCCTGACTTACAgctgcaacaacagcagcatcaGCACCAACAGCAACAGAATCAACAGCAACATCCACAGGCAATATTAatacaaaatcaaaatcaagCTGCTATTGTCAGTCTACAACAGACGTCGGCCGGTAATTACATACCCGTATCAGGAGTTCAAACGGTAACCACCAGTGTAGCGGGTGgccaacagcagcaacaacaacacaccACCATCGTAACAGCGGACGATTCGGATTCGGATAAGCCGTCCCTGCAAAAGATTTGCAAAACTGAAGCGTCCTCAGCTTCACCGGCGTCCACTTCATCGGCATCAGCATCAAATAATGCTGGTGGTGTAACTGCGGTCACAGCATCGGGAACAGCGATCGTAACACAAATTGTAGTAGCAAGAGACggaaaagataaaaatatgaCTAGTTTAGGCATGGGAATGaaTGGTGGCATTCTAGGAGTCCCAATGGGCTTTTTAGATTTTGCCCCCGAACCACCGGCACCCTCAGCAACACCTGTCACGGTTACAGAACACGTAGATTTATCCTGTAACCCCAGCACGGATACCAGAGATTTATCAAATCCCTCAGAACCGCTCGATATCGACAATCATTTGGCTCAGCACATGATACAACGGCTCGATCAATCTCCCATGCACACCATACATCATCAGACCGGTGACGAATCAAATTCGAATCTAGTTCAGCATATAAAAAGCGAAGTAATCGATGCCAAACAACAGCAGgtccagcagcagcaacaacaagccGCCGCTGTAGCCGCTCACCATCAAGCTCAGCAGCAACAGTTGCATGCACAACAATTAGCAGCAGCGCAAGGACAAAcacatcagcaacaacaacagcaggcAGCCcatcagcaacagcagcagcaacaacaacagcagcaggcACATCAACAACATCACCAGCAACAGGCCCAccagcagcagcatcatcagGAAATAACCGGTGCCACCGTTATGGAGATTGATCCGAGCCAAATAAAACATGAGCCGGGCATGATAATAACACCGGAAATTGTAAATATGATGACGACAGGACATATGGACATGTACAATTCCGATACGAGCGATGATTCAATGATGATTGCCAACGGTTCACCACATGATCAAAATGAACCCCATTACACGAATTTAGATCAACAGCATGGCGATATGAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAACATGAGCCTGACGAAAGCATCCGTTACCTATGGCATCCCCTCAACCACCCTATGGCAAAGGGCCCACCGCATGGGCATCGAAACACCGAAGAAGGAAGGAGGTACCAAATCGTGGAACGAAGACTCGCTCAACAATGCACTGGAGGCTTTGCGCTCGGGACAAATATCGGCCAACAAAGCATCGAAAGCCTTTGGTATACCTTCGTCGACGTTGTATAAAATAGCACGACGTGAAGGTATACGATTGGCAGCGCCGTTTAATGCCGCCCCAACCACCTGGACGCCGGAAGATTTAGAACGGGCCTTGGAAGCAATACGTGCGGGCCATACATCGGTACAGAAGGCAAGTGCAGAATTTGGTATACCCACAGGCACATTATATGGTCGTTGTAAACGTGAGGGCATCGAATTATCCCGTTCAAATCCTACACCCTGGTCTGAAGATGCTATGAATGAAGCTTTAAATTCTGTGCGCATTGGCCAAATGTCTATAAATCAAGCTGCTATCCATTATAATTTACCGTATAGTTCTTTATATGGTCGCTTTAAGCGCGGCAAATATGATGTGGCCAATACGAGCGGTACTTCCATTAATAATACATCGGGCAATACCTCCGGTAGTATTGAAATTATTGAACATAGTCAAGAGAATTCGttgCCTATGTTTCAGCAACAATTCCAATATAGTCCATCGCCGCATCAGCAACAGCACGGTGGCAGTAGTACACCGCAGCAAAGTCAAACGCCACAGCATCTACAGCAGCATGTTGTGCATATACAGCAACAGCATCATCAGCAACAGCCCCAACATGCGCAACATATCCAACAGCAAGATGTTGTAACCTCGTCAAGTCAACAACAAgtccaacagcaacaacatgcCAGCAATACGGCAGCctcccaacaacaacaacaacagcagcagcaacaacaacaaattcaaCAGATTTATCATCATCACAGTACACCCGAGAGAAGTTGA
- Protein Sequence
- MKNPFASYYDNEDNGEYMPEIRRGLLRTAEQLKIKGLCETAENADDLNDTATATITVSENIQQAVVGNIVNATVVPGQQSPPIPHQQHQPQQQQQQQQQQQHQHQQQQQQQQQLTTTAVLSPGSAQQLAATGQLVTSTPATTPQQQQQQQRKSRVRKRSKSPDLQLQQQQHQHQQQQNQQQHPQAILIQNQNQAAIVSLQQTSAGNYIPVSGVQTVTTSVAGGQQQQQQHTTIVTADDSDSDKPSLQKICKTEASSASPASTSSASASNNAGGVTAVTASGTAIVTQIVVARDGKDKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPSEPLDIDNHLAQHMIQRLDQSPMHTIHHQTGDESNSNLVQHIKSEVIDAKQQQVQQQQQQAAAVAAHHQAQQQQLHAQQLAAAQGQTHQQQQQQAAHQQQQQQQQQQQAHQQHHQQQAHQQQHHQEITGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSDDSMMIANGSPHDQNEPHYTNLDQQHGDMKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDVANTSGTSINNTSGNTSGSIEIIEHSQENSLPMFQQQFQYSPSPHQQQHGGSSTPQQSQTPQHLQQHVVHIQQQHHQQQPQHAQHIQQQDVVTSSSQQQVQQQQHASNTAASQQQQQQQQQQQQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00979276;
- 90% Identity
- iTF_00899457; iTF_01315425; iTF_01427393; iTF_01201519; iTF_01174142; iTF_01237570; iTF_01235639; iTF_01236574; iTF_00741769; iTF_00760010; iTF_00997641; iTF_01314579; iTF_01397340; iTF_01376553; iTF_00199787; iTF_00259691; iTF_01109263; iTF_01399375; iTF_00435440; iTF_00350100; iTF_00900500; iTF_00655241; iTF_01074388; iTF_01398403; iTF_01176852; iTF_01260913; iTF_01137915; iTF_00975516; iTF_01259132; iTF_01313724; iTF_01373982; iTF_00922207; iTF_00922022;
- 80% Identity
- -