Gang036558.1
Basic Information
- Insect
- Germaria angustata
- Gene Symbol
- -
- Assembly
- GCA_963681545.1
- Location
- OY813002.1:76311796-76328531[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.6e-10 1.8e-07 32.1 0.0 1 38 548 586 548 591 0.89 2 4 4.9e-13 5.5e-10 40.1 0.0 2 39 603 640 602 643 0.94 3 4 5.8e-17 6.5e-14 52.6 0.0 1 45 657 702 657 702 0.98 4 4 1.8e-18 2e-15 57.5 0.0 1 43 709 752 709 754 0.96
Sequence Information
- Coding Sequence
- ATGAGTGTTGTAAATGAGTGTTGGGCTGGTCGGCCACAAGCATACCAAGCCAAAGAGGGTTTATTTGGTGGGGGTCTTTTGCGCACCGCCGAACAGTTGAAAATCAAAGGTCTTTGTGAGACAGCAGAAAACGCCGATGATCTGAATGATACGGCCACAGCAACAATAACAGTGTCCGAGAATATACAACAAGCTGTCGTTGGCAATATTGTCAATGCCACAGTAGTGCCGGGACAGCAATCTCCTCCTATACCCCACCAACAACATCAgccacaacaacagcagcagcaacaacagcatcaacaccagcaacaacaattaaccACTACCGCCGTCTTAAGTCCTGGAAGTGCTCAACAGTTAGCAGTAGCCGGACAATTGGTAACCTCAACGCCTGCCACAACaccgcaacaacaacaacagcagcaacaacgaaAATCCAGAGTGCGTAAACGTTCAAAATCGCCCGATTTGCAactgcaacagcagcagcaccaTCAACAGCAGCAAAGCCAACAGCACCCACAGgcaatattaatacaaaatcaaaatcaagcTGCTATTGTCAGTCTACAACAGACATCGGCTGGAAATTACATACCCGTATCAGGCGTACAAACGGTAACCACCAGTGTAGCGGGTgggcaacagcaacagcagacCACCATCGTAACAGCGGACGATTCGGACTCGGATAAACCTTCGCTGCAAAAGATTTGCAAAACTGAAGCGTCATCAGCTTCACCGGCGTCCACATCATCGGTATCAGCATCAAATAATGCTGGTGGTGTAACTGCGGTCACAGCATCGGGAACAGCGATCGTAACACAAATTGTAGTAGCAAGAGAcggaaaagataaaaatatgacTAGTTTAGGCATGGGAATGaaTGGTGGCATTCTAGGAGTCCCTATGGGCTTTTTAGATTTTGCCCCTGAACCACCGGCACCCTCAGCAACACCTGTCACGGTTACAGAACATGTAGATTTATCCTGTAACCCCAGCACGGATACCCGAGATCTATCAAATCCATCAGAACCGCTCGATATCGACAATCATTTGGCTCAACACATGATACAACGGCTCGATCAATCTCCCATGCACACTATACACCATCAGACGGGCGATGAATCAAATTCGAATCTGGTTCAGCATATAAAAAGCGAAGTTATTGATGCCAAACAGCAGCAACAGGTCCAACAGCATCAAGCCGCTGCGGCCGCTCATCATCAAGCTCAACAACAGCAGCTGCATGCACAACAATTAGCAGCAGCGCAGGGCCAAACGcatcagcaacaacagcaggcagcccaccaacaacaacagcagcagcaacagcaacaacaggcACATCAACACCACCAGCAACAGGCCCACCAGCAACATCATCAAGAGATTACCGGAGCCACAGTCATGGAGATTGATCCGAGCCAAATAAAACATGAACCGGGCATGATAATAACACCGGAAATTGTAAATATGATGACGACAGGGCATATGGACATGTACAATTCCGATACGAGCGATGATTCAATGATGATTGCCAACGGTTCACCACATGATCAAAATGAACCCCATTATACAAATTTAGATCAACAGCATGGCGATATGAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCACTGAAGAATCAAAACATGAGCCTGACGAAAGCATCCGTTACCTATGGCATCCCCTCAACCACACTCTGGCAAAGGGCCCACCGTATGGGCATCGAAACACCGAAGAAGGAAGGAGGTACGAAGTCATGGAATGAAGACTCGCTAAACAACGCACTGGAGGCTTTGCGTTCAGGACAAATATCGGCCAATAAGGCATCGAAAGCCTTTGGTATACCTTCGTCAACGTTGTATAAAATAGCACGACGTGAAGGTATACGATTGGCAGCGCCGTTTAATGCCGCCCCCACCACCTGGACGCCGGAAGATTTGGAAAGGGCCTTGGAAGCAATACGTGCAGGTCATACATCGGTACAGAAGGCAAGTGCAGAATTTGGTATTCCTACAGGCACTTTATACGGCCGTTGTAAACGTGAGGGCATTGAATTATCCCGTTCGAATCCAACACCCTGGTCCGAAGATGCTATGAATGAAGCTTTGAACTCTGTGCGAATTGGACAAATGTCTATTAATCAAGCTGCTATACATTATAATCTACCATATAGTTCTCTGTATGGTCGTTTTAAACGCGGCAAATATGATGTGGCCAATACAAGCGGTACTTCCATAAATAATACATCCGGTAATACCTCCGGTAGTATTGAAATTATTGAACATAGTCAAGAGAATTCGttGCCTATGTTTCAGCAACAATTCCAATATAGTCCATCGCCGCATCAGCAACAGCATGGCGGCAGTAGTACACCACAACAAAGTCAAACGCCACAGCATCTTCAGCAACATGTTGTGCATATACAGCAACACCACCAGCAACAGACTCAACATGCGCAGCATATCCAACAGCAAGATGTTGTAACATCGTCAAGTCAACAGCAAgtccaacagcaacaacatgcCAGCAATGCGGCAGCCTCCCAACAacagcaaattcaacaaatttatCATCACCACAGCACACCCGAAAGAAGTTGA
- Protein Sequence
- MSVVNECWAGRPQAYQAKEGLFGGGLLRTAEQLKIKGLCETAENADDLNDTATATITVSENIQQAVVGNIVNATVVPGQQSPPIPHQQHQPQQQQQQQQHQHQQQQLTTTAVLSPGSAQQLAVAGQLVTSTPATTPQQQQQQQQRKSRVRKRSKSPDLQLQQQQHHQQQQSQQHPQAILIQNQNQAAIVSLQQTSAGNYIPVSGVQTVTTSVAGGQQQQQTTIVTADDSDSDKPSLQKICKTEASSASPASTSSVSASNNAGGVTAVTASGTAIVTQIVVARDGKDKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPSEPLDIDNHLAQHMIQRLDQSPMHTIHHQTGDESNSNLVQHIKSEVIDAKQQQQVQQHQAAAAAHHQAQQQQLHAQQLAAAQGQTHQQQQQAAHQQQQQQQQQQQAHQHHQQQAHQQHHQEITGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSDDSMMIANGSPHDQNEPHYTNLDQQHGDMKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDVANTSGTSINNTSGNTSGSIEIIEHSQENSLPMFQQQFQYSPSPHQQQHGGSSTPQQSQTPQHLQQHVVHIQQHHQQQTQHAQHIQQQDVVTSSSQQQVQQQQHASNAAASQQQQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00979276;
- 90% Identity
- iTF_00258784;
- 80% Identity
- -